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1. exfi exfi Public

   Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools

   Python 3 1

2. smsk smsk Public template

   Snakemake skeleton - Build workflows with Snakemake

   Python 17 6

3. smsk_khmer_trinity smsk_khmer_trinity Public

   Transcriptome assembly via digital normalization with khmer and Trinity

   Python 4 2

4. smsk_annotate smsk_annotate Public

   Pipeline to annotate a transcriptome assembly, coding and noncoding parts.

   R 1 1

5. smsk_selection smsk_selection Public

   Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml

   C++ 7 1

6. smsk_trinotate smsk_trinotate Public

   Snakemake workflow to run transdecoder + trinotate

   Python 8 2