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Expand Up @@ -5,6 +5,9 @@ KrakenTools is a suite of scripts to be used for post-analysis of
Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper
if using KrakenTools with any of the listed programs.

## Cite
[Lu J, Rincon N, Wood D E, Breitwieser F P, Pockrandt C, Langmead B, Salzberg S L, Steinegger M. Metagenome analysis using the Kraken software suite. Nature Protocols, doi: 10.1038/s41596-022-00738-y (2022)](https://www.nature.com/articles/s41596-022-00738-y)

## Links to Kraken github pages
1. [Kraken 1](https://github.com/DerrickWood/kraken)
2. [Kraken 2](https://github.com/DerrickWood/kraken2)
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