Sync upstream fixes from mwang87/MassQueryLanguage #2
+141
−34
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fixing regex for formulas
Brings in the following fixes from upstream: - Regex fix (PR mwang87#251) - Updated dependencies - File size and symlinks handling improvements - Various bug fixes and test updates Resolved conflict in setup.py by keeping massql4motifs metadata
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Summary
This PR brings in the latest fixes from the upstream mwang87/MassQueryLanguage repository while preserving all motifs functionality.
Changes included from upstream
Conflict resolution
There was only one conflict in
setup.pyregarding package metadata. I resolved it by keeping the massql4motifs package name and author information while incorporating all other changes from upstream.Testing
This allows the massql4motifs fork to benefit from Ming's latest bug fixes while maintaining all the motifs-specific extensions.