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Restore behavior of tm_t_abnormality_by_wrong as it was before migration #1539

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Merged
averissimo merged 4 commits into from
Jun 26, 2026
Merged

Restore behavior of tm_t_abnormality_by_wrong as it was before migration #1539

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9cfae18
refactor: allow for multiple values for worst_flag_indicator
osenan May 31, 2026
6ba963c
chore: fix lintr
osenan May 31, 2026
9bd2e66
fix: change the way we extract the input value due to usage of teal.w…
osenan Jun 1, 2026
714fd08
Fixes validation and case when worst flag does not exist (#1543)
averissimo Jun 26, 2026
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24 changes: 15 additions & 9 deletions R/tm_t_abnormality_by_worst_grade.R
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Original file line number Diff line number Diff line change
Expand Up @@ -359,9 +359,6 @@ tm_t_abnormality_by_worst_grade <- function(label, # nolint: object_length.
worst_high_flag_var <- migrate_choices_selected_to_variables(worst_high_flag_var)
worst_low_flag_var <- migrate_choices_selected_to_variables(worst_low_flag_var)
worst_flag_indicator <- migrate_choices_selected_to_values(worst_flag_indicator)
worst_flag_value <- as.character(worst_flag_indicator$selected)
checkmate::assert_character(worst_flag_value, min.len = 1L, .var.name = "worst_flag_indicator$selected")
worst_flag_value <- worst_flag_value[[1]]

checkmate::assert_string(label)
checkmate::assert_string(dataname)
Expand Down Expand Up @@ -399,7 +396,7 @@ ui_t_abnormality_by_worst_grade <- function(id, # nolint: object_length.
atoxgr_var,
worst_high_flag_var,
worst_low_flag_var,
worst_flag_value,
worst_flag_indicator,
add_total,
drop_arm_levels,
id_var,
Expand Down Expand Up @@ -444,9 +441,13 @@ ui_t_abnormality_by_worst_grade <- function(id, # nolint: object_length.
),
tags$div(
tags$label("Value Indicating Worst Grade"),
tags$p(
class = "tm-abnormality-worst-grade-worst-flag-value text-muted mb-0",
worst_flag_value
teal.widgets::optionalSelectInput(
ns("worst_flag_indicator"),
label = NULL,
choices = worst_flag_indicator$choices,
selected = if (is.function(worst_flag_indicator$selected)) NULL else worst_flag_indicator$selected,
multiple = FALSE,
fixed = teal.picks::is_pick_fixed(worst_flag_indicator)
)
),
checkboxInput(
Expand All @@ -471,7 +472,6 @@ srv_t_abnormality_by_worst_grade <- function(id, # nolint: object_length.
arm_var,
paramcd,
atoxgr_var,
worst_flag_value,
worst_low_flag_var,
worst_high_flag_var,
add_total,
Expand Down Expand Up @@ -544,6 +544,12 @@ srv_t_abnormality_by_worst_grade <- function(id, # nolint: object_length.
"Please select the Worst High Grade flag variable."
)
)
validate(
need(
!is.null(input$worst_flag_indicator) && nzchar(input$worst_flag_indicator),
"Please select a value indicating the worst grade."
)
)

pcd <- anl_selectors$paramcd()
pcd_vals <- if (is.null(pcd$values)) {
Expand Down Expand Up @@ -632,7 +638,7 @@ srv_t_abnormality_by_worst_grade <- function(id, # nolint: object_length.
atoxgr_var = as.vector(anl_selectors$atoxgr_var()$variables$selected),
worst_high_flag_var = as.vector(anl_selectors$worst_high_flag_var()$variables$selected),
worst_low_flag_var = as.vector(anl_selectors$worst_low_flag_var()$variables$selected),
worst_flag_indicator = worst_flag_value,
worst_flag_indicator = input$worst_flag_indicator,
add_total = input$add_total,
total_label = total_label,
drop_arm_levels = input$drop_arm_levels,
Expand Down
2 changes: 1 addition & 1 deletion R/tm_t_binary_outcome.R
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Original file line number Diff line number Diff line change
Expand Up @@ -827,7 +827,7 @@ srv_t_binary_outcome <- function(id,
paramcd_pick$values$selected
}

if (c(any(!is.data.frame(anl), nrow(anl) == 0L, length(aval_var) == 0L, length(paramcd_sel) == 0L))){
if (c(any(!is.data.frame(anl), nrow(anl) == 0L, length(aval_var) == 0L, length(paramcd_sel) == 0L))) {
return(invisible(NULL))
}

Expand Down
2 changes: 1 addition & 1 deletion tests/testthat/test-shinytest2-tm_t_abnormality_by_worst_grade.R
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Expand Up @@ -94,7 +94,7 @@ testthat::test_that(
"WGRLOFL"
)
testthat::expect_equal(
app_driver$get_text(".tm-abnormality-worst-grade-worst-flag-value"),
app_driver$get_active_module_input("worst_flag_indicator"),
"Y"
)
}
Expand Down
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