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When there are no warning, error or note, grep "ERROR:" result.txt > bioccheck-errors causes error in git action #14

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When there are no warning, error or note, grep "ERROR:" result.txt > bioccheck-errors causes error in git action #14

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17 changes: 14 additions & 3 deletions action.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -225,9 +225,20 @@ runs:
${GITHUB_ACTION_PATH}/BiocCheck.R \
${BIOC_OPTIONS} ${{ inputs.path }} 2>&1 | \
tee result.txt || echo
grep "ERROR:" result.txt > bioccheck-errors
grep "NOTE:" result.txt > bioccheck-notes
grep "WARNING:" result.txt > bioccheck-warnings
if grep "ERROR:" result.txt
then
grep "ERROR:" result.txt > bioccheck-errors
else
touch bioccheck-errors
fi
if grep "NOTE:" result.txt
then
grep "NOTE:" result.txt > bioccheck-notes
fi
if grep "WARNING:" result.txt
then
grep "WARNING:" result.txt > bioccheck-warnings
fi
echo "🔬 ------------------------------------------- 🔬"
shell: bash

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