adds files from checklist::setup_package

.github/workflows/check_on_branch.yml

@@ -0,0 +1,20 @@
+on:
+  push:
+    branches-ignore:
+      - main
+      - master
+      - ghpages
+
+name: "check package"
+
+jobs:
+  check-package:
+    runs-on: ubuntu-latest
+    name: "check package"
+    env:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+      ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }}
+    steps:
+      - uses: inbo/actions/check_pkg@master
+        with:
+          token: ${{ secrets.PAT }}

.github/workflows/check_on_different_r_os.yml

@@ -0,0 +1,99 @@
+on:
+  push:
+    branches:
+      - main
+      - master
+  pull_request:
+    branches:
+      - main
+      - master
+
+name: R-CMD-check-OS
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-20.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      _R_CHECK_SYSTEM_CLOCK_: false
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+        with:
+          r-version: ${{ matrix.config.r }}
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        env:
+          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
+        run: |
+          Rscript -e "remotes::install_github('r-hub/sysreqs')"
+          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
+          sudo -s eval "$sysreqs"
+          sudo apt-get install -y libcurl4-openssl-dev
+
+      - name: Install dependencies
+        run: |
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@master
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check
+          retention-days: 5

.github/workflows/check_on_main.yml

@@ -0,0 +1,21 @@
+on:
+  push:
+    branches:
+      - main
+      - master
+  schedule:
+    - cron: '6 0 15 * *'
+
+name: "check package on main"
+
+jobs:
+  check-package:
+    runs-on: ubuntu-latest
+    name: "check package"
+    env:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+      ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }}
+    steps:
+      - uses: inbo/actions/check_pkg@master
+        with:
+          token: ${{ secrets.PAT }}

.github/workflows/release.yml

@@ -0,0 +1,30 @@
+on:
+  push:
+    tags:
+      - 'v*'
+
+name: Create Release
+
+jobs:
+  build:
+    name: Create Release
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+      - name: Get tag message
+        run: |
+          TAG_BODY=$(git tag --contains ${{ github.sha }} -n100 | awk '(NR>1)')
+          echo "::set-output name=TAG_BODY::$TAG_BODY"
+        id: tag-body
+      - name: Create Release
+        id: create_release
+        uses: actions/create-release@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          tag_name: ${{ github.ref }}
+          release_name: Release ${{ github.ref }}
+          body: ${{ steps.tag-body.outputs.TAG_BODY }}
+          draft: false
+          prerelease: false

checklist.yml

@@ -0,0 +1,5 @@
+description: Configuration file for checklist::check_pkg()
+package: yes
+allowed:
+  warnings: []
+  notes: []

codecov.yml

@@ -0,0 +1,17 @@
+comment: true
+
+coverage:
+  precision: 1
+  round: down
+  range: "70...100"
+  status:
+    patch:
+      default:
+        target: auto
+        threshold: 10%
+        informational: true
+    project:
+      default:
+        target: auto
+        threshold: 1%
+        informational: false

pkgdown/extra.css

@@ -0,0 +1,92 @@
+body {
+  background-color: #f5f5f5;
+  color: #5e5e5e;
+  background-image: url('reference/figures/background-pattern.png');
+  font-family: FlandersArtSans-Light, Verdana, Arial, sans-serif;
+}
+
+.row{
+  background-color: #ffffff;
+}
+
+a {
+  color: #c04384;
+}
+a:hover {
+  color: #337ab7;
+}
+
+.navbar,
+.label-default,
+.navbar-default .navbar-nav>.active>a, .navbar-default .navbar-nav>.active>a:hover, .navbar-default .navbar-nav>.active>a:focus {
+  background-color: #356196;
+}
+
+.navbar-default .navbar-link,
+.navbar-default .navbar-nav>li>a {
+  color: #ffffff;
+}
+
+.nav-pills li.active>a, .nav-pills li>a:hover {
+  background-color: #c2c444;
+}
+
+.nav-pills>li.active>a, .nav-pills>li.active>a:focus {
+  color: #ffffff;
+  background-color: #356196;
+}
+
+.nav-pills a {
+  color: #5e5e5e;
+}
+
+@font-face{
+  font-family: inbo;
+  src:
+    url('figures/flanders.woff2') format('woff2'),
+    url('reference/figures/flanders.woff') format('woff');
+;
+  font-weight:normal;
+  font-style:normal;
+}
+
+code.sourceCode.diff span.st {
+  background-color: #C04384;
+  color: #FFFFFF;
+  font-weight: bold;
+}
+
+code.sourceCode.diff span.va {
+  background-color: #E4E517;
+  font-weight: bold;
+}
+
+/*selection color*/
+::selection {
+  background: #c04384;
+  color: #fff;
+}
+::-moz-selection {
+  background: #c04384;
+  color: #fff;
+}
+
+.navbar-default .navbar-nav>.open>a, .navbar-default .navbar-nav>.open>a:focus, .navbar-default .navbar-nav>.open>a:hover{
+  color: #337ab7;
+  background: #fff;
+}
+
+.navbar-default .navbar-nav>.active>a, .navbar-default .navbar-nav>.active>a:focus, .navbar-default .navbar-nav>.active>a:hover {
+  color: #337ab7;
+  background: #fff;
+}
+
+.navbar-default .navbar-nav>li>a:hover{
+  color: #337ab7;
+  background: #fff;
+}
+
+.dropdown-menu>li>a:hover{
+  color: #fff;
+  background: #337ab7;
+}