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upgrade gatk
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@igordot
igordot committed Mar 6, 2023
1 parent 0c294f5 commit d59a37c
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2 changes: 1 addition & 1 deletion segments/snvs-mutect2.sh
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Expand Up @@ -164,7 +164,7 @@ fi
module add python/cpu/3.6.5

# command
gatk_bin="/gpfs/data/igorlab/software/GenomeAnalysisTK/gatk-4.2.4.0/gatk"
gatk_bin="/gpfs/data/igorlab/software/GenomeAnalysisTK/gatk-4.3.0.0/gatk"

echo
echo " * GATK: $(readlink -f $gatk_bin) "
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