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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,27 +1,27 @@ | ||
| if (requireNamespace("msigdbdf", quietly = TRUE)) { | ||
| test_that("msigdbr_collections()", { | ||
| collections <- msigdbr_collections() | ||
| expect_s3_class(collections, "tbl_df") | ||
| expect_gt(nrow(collections), 10) | ||
| expect_lt(nrow(collections), 30) | ||
| expect_match(collections$gs_collection, "H", fixed = TRUE, all = FALSE) | ||
| expect_match(collections$gs_collection, "C2", fixed = TRUE, all = FALSE) | ||
| expect_match(collections$gs_collection, "C7", fixed = TRUE, all = FALSE) | ||
| expect_match(collections$gs_collection, "C8", fixed = TRUE, all = FALSE) | ||
| }) | ||
| test_that("msigdbr_collections()", { | ||
| skip_if_not_installed("msigdbdf") | ||
| collections <- msigdbr_collections() | ||
| expect_s3_class(collections, "tbl_df") | ||
| expect_gt(nrow(collections), 10) | ||
| expect_lt(nrow(collections), 30) | ||
| expect_match(collections$gs_collection, "H", fixed = TRUE, all = FALSE) | ||
| expect_match(collections$gs_collection, "C2", fixed = TRUE, all = FALSE) | ||
| expect_match(collections$gs_collection, "C7", fixed = TRUE, all = FALSE) | ||
| expect_match(collections$gs_collection, "C8", fixed = TRUE, all = FALSE) | ||
| }) | ||
|
|
||
| test_that("msigdbr_collections() db_species", { | ||
| chs <- msigdbr_collections(db_species = "Hs") | ||
| expect_s3_class(chs, "tbl_df") | ||
| expect_gt(nrow(chs), 10) | ||
| expect_lt(nrow(chs), 30) | ||
| expect_match(chs$gs_collection, "H", fixed = TRUE, all = FALSE) | ||
| expect_match(chs$gs_collection, "C8", fixed = TRUE, all = FALSE) | ||
| cmm <- msigdbr_collections(db_species = "Mm") | ||
| expect_s3_class(cmm, "tbl_df") | ||
| expect_gt(nrow(cmm), 10) | ||
| expect_lt(nrow(cmm), 30) | ||
| expect_match(cmm$gs_collection, "MH", fixed = TRUE, all = FALSE) | ||
| expect_match(cmm$gs_collection, "M8", fixed = TRUE, all = FALSE) | ||
| }) | ||
| } | ||
| test_that("msigdbr_collections() db_species", { | ||
| skip_if_not_installed("msigdbdf") | ||
| chs <- msigdbr_collections(db_species = "Hs") | ||
| expect_s3_class(chs, "tbl_df") | ||
| expect_gt(nrow(chs), 10) | ||
| expect_lt(nrow(chs), 30) | ||
| expect_match(chs$gs_collection, "H", fixed = TRUE, all = FALSE) | ||
| expect_match(chs$gs_collection, "C8", fixed = TRUE, all = FALSE) | ||
| cmm <- msigdbr_collections(db_species = "Mm") | ||
| expect_s3_class(cmm, "tbl_df") | ||
| expect_gt(nrow(cmm), 10) | ||
| expect_lt(nrow(cmm), 30) | ||
| expect_match(cmm$gs_collection, "MH", fixed = TRUE, all = FALSE) | ||
| expect_match(cmm$gs_collection, "M8", fixed = TRUE, all = FALSE) | ||
| }) |