Clean up code

igordot · Feb 14, 2025 · 2704a47 · 2704a47
1 parent 1a08b09
commit 2704a47
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/R/msigdbr-collections.R b/R/msigdbr-collections.R
@@ -8,9 +8,11 @@
 #' @export
 #'
 #' @examples
+#' \donttest{
 #' msigdbr_collections()
+#' }
 msigdbr_collections <- function(db_species = "Hs") {
-  # rlang::check_installed("msigdbdf")
+  # Check that msigdbdf is installed
   msigdbr_check_data()
 
   # Get the full table of gene sets and their member genes

diff --git a/R/msigdbr.R b/R/msigdbr.R
@@ -40,10 +40,6 @@
 #' }
 msigdbr <- function(species = "Homo sapiens", db_species = "HS", collection = NULL, subcollection = NULL, category = deprecated(), subcategory = deprecated()) {
   # Check that msigdbdf is installed
-  # a dependency listed in DESCRIPTION Suggests is not guaranteed to be installed
-  # if (!requireNamespace("msigdbdf", quietly = TRUE)) {
-  #   stop("package 'msigdbdf' must be installed to use this function", call. = FALSE)
-  # }
   msigdbr_check_data()
 
   # Check parameters

diff --git a/man/msigdbr_collections.Rd b/man/msigdbr_collections.Rd