Germline variant payload #15
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lindaxiang
requested changes
Sep 21, 2023
| payload = { | ||
| 'analysisType': { | ||
| 'name': 'variant_processing' | ||
| }, |
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analysisType should be variant_calling.
| "variant_class":"Germline", | ||
| 'studyId': analysis_dict.get('studyId'), | ||
| 'workflow': { | ||
| 'workflow_name': "%s-%s" % (args.wf_name,args.tool), |
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Let's put args.tool into analysis_tools and leave workflow_name as it is.
| elif re.match(r'.*.vcf.gz.tbi$', file_to_upload): | ||
| file_type = 'TBI' | ||
| file_info.update({'dataType': 'VCF Index'}) | ||
| file_info['info'].update({'analysis_tools': [{key.split(":")[-1]:pipeline_info[key]} for key in pipeline_info.keys()]}) |
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We can move this pipeline_info into workflow section, and add individual tool here.
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