Fix bad URLs for CRAN.

hannahlowens · Aug 20, 2024 · 159c596 · 159c596
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diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
 Version: 0.2.2
-Date: 2024-08-16 13:33:03 UTC
-SHA: 5349dbdd7980b025b91ddd7109c6144c31e29316
+Date: 2024-08-19 07:28:33 UTC
+SHA: 1a06eba18f2f978b23c17d5939207e705c9c1c32
diff --git a/NEWS.md b/NEWS.md
@@ -4,6 +4,7 @@
 - Added possibility to specify method in `interpolateRaster()` and `smoothRaster()` using `method` argument as in `fields::Tps()`.
 - Added `verticalTransect()` for visualizing vertical slices through multi-layered `spatRaster` 
 objects.
+- Updated bad URLs for two citations to archived version.
 
 # voluModel 0.2.1
 

diff --git a/docs/articles/a_Introduction.html b/docs/articles/a_Introduction.html
diff --git a/docs/articles/b_RasterProcessing.html b/docs/articles/b_RasterProcessing.html
diff --git a/docs/articles/c_DataSampling.html b/docs/articles/c_DataSampling.html
diff --git a/docs/articles/d_Visualization.html b/docs/articles/d_Visualization.html
diff --git a/docs/articles/e_GLMWorkflow.html b/docs/articles/e_GLMWorkflow.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -7,4 +7,4 @@ articles:
   c_DataSampling: c_DataSampling.html
   d_Visualization: d_Visualization.html
   e_GLMWorkflow: e_GLMWorkflow.html
-last_built: 2024-08-16T14:06Z
+last_built: 2024-08-20T09:49Z
diff --git a/tests/testthat/Rplots.pdf b/tests/testthat/Rplots.pdf
diff --git a/vignettes/a_Introduction.Rmd b/vignettes/a_Introduction.Rmd
@@ -416,7 +416,7 @@ Harvard University M, Morris P J (2022). Museum of Comparative Zoology, Harvard
 
 Hendrickson D A, Cohen A E, Casarez M J (2022). University of Texas, Biodiversity Center, Ichthyology Collection (TNHCi). Version 5.175. University of Texas at Austin, Biodiversity Collections. DOI: 10.15468/h8gxdr. Accessed via GBIF on 2020-10-13.
 
-INVEMAR. SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://www.invemar.org.co/siam/sibm/index.htm Accessed via OBIS on 2020-11-04. 
+INVEMAR. SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://siam.invemar.org.co/ Accessed via OBIS on 2020-11-04. 
 
 Locarnini RA, Mishonov AV, Baranova OK, Boyer TP, Zweng MM, Garcia HE, Reagan JR, Seidov D, Weathers K, Paver CR, Smolyar I (2018). World Ocean Atlas 2018, Volume 1: Temperature. A. Mishonov Technical Ed.; NOAA Atlas NESDIS 81, 52pp.
 
@@ -453,7 +453,7 @@ R Core Team (2017). R: A language and environment for statistical computing. R F
 
 Robins R (2021). UF FLMNH Ichthyology. Version 117.342. Florida Museum of Natural History. DOI: 10.15468/8mjsel. Accessed via GBIF on 2020-10-13.
 
-Tavera L, Tavera M. L (2021). Biodiversidad de los recursos marinos y costeros entre Cartagena y el Golfo de Urabá, Caribe colombiano. Version 2.4. Instituto de Investigaciones Marinas y Costeras - Invemar. DOI: 10.15472/d2jusp. Accessed via GBIF on 2020-10-13.
+Tavera L, Tavera ML. (2021). Biodiversidad de los recursos marinos y costeros entre Cartagena y el Golfo de Urabá, Caribe colombiano. Version 2.4. Instituto de Investigaciones Marinas y Costeras - Invemar. DOI: 10.15472/d2jusp. Accessed via GBIF on 2020-10-13.
 
 UNIBIO, IBUNAM. CNPE/Coleccion Nacional de Peces. DOI: 10.15468/o5d48z. Accessed via GBIF on 2020-10-13.
 

diff --git a/vignettes/c_DataSampling.Rmd b/vignettes/c_DataSampling.Rmd
@@ -336,7 +336,7 @@ Harvard University M, Morris P J (2022). Museum of Comparative Zoology, Harvard
 
 Hendrickson D A, Cohen A E, Casarez M J (2022). University of Texas, Biodiversity Center, Ichthyology Collection (TNHCi). Version 5.175. University of Texas at Austin, Biodiversity Collections. DOI: 10.15468/h8gxdr. Accessed via GBIF on 2020-10-13.
 
-INVEMAR (2022). SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://www.invemar.org.co/siam/sibm/index.htm Accessed via OBIS on 2020-11-04. 
+INVEMAR (2022). SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://siam.invemar.org.co/ Accessed via OBIS on 2020-11-04. 
 
 Locarnini RA, Mishonov AV, Baranova OK, Boyer TP, Zweng MM, Garcia HE, Reagan JR, Seidov D, Weathers K, Paver CR, Smolyar I (2018). World Ocean Atlas 2018, Volume 1: Temperature. A. Mishonov Technical Ed.; NOAA Atlas NESDIS 81, 52pp.
 

diff --git a/vignettes/d_Visualization.Rmd b/vignettes/d_Visualization.Rmd
@@ -178,7 +178,7 @@ unlink(td, recursive = T)
 
 # References
 
-Bakis Y (2021): TU_Fish. v1.1. No organization. Dataset/Occurrence. https://fishair.org/ipt/resource?r=tu_fish&v=1.1 Accessed via OBIS on 2020-11-04.  
+Bakis Y (2021): TU_Fish. v1.1. No organization. Dataset/Occurrence. https://web.archive.org/web/20221202141213/https://bgnn.tulane.edu/ipt/resource?r=tu_fish&v=1.1 Accessed via OBIS on 2020-11-04.  
 
 Bentley A (2022). KUBI Ichthyology Collection. Version 17.80. University of Kansas Biodiversity Institute. DOI: 10.15468/mgjasg. Accessed via GBIF on 2020-10-13.
 
@@ -220,7 +220,7 @@ Harvard University M, Morris P J (2022). Museum of Comparative Zoology, Harvard
 
 Hendrickson D A, Cohen A E, Casarez M J (2022). University of Texas, Biodiversity Center, Ichthyology Collection (TNHCi). Version 5.175. University of Texas at Austin, Biodiversity Collections. DOI: 10.15468/h8gxdr. Accessed via GBIF on 2020-10-13.
 
-INVEMAR. SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://web.archive.org/web/20221202141213/https://bgnn.tulane.edu/ipt/resource?r=tu_fish&v=1.1 Accessed via OBIS on 2020-11-04. 
+INVEMAR. SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://siam.invemar.org.co/ Accessed via OBIS on 2020-11-04. 
 
 Locarnini RA, Mishonov AV, Baranova OK, Boyer TP, Zweng MM, Garcia HE, Reagan JR, Seidov D, Weathers K, Paver CR, Smolyar I (2018). World Ocean Atlas 2018, Volume 1: Temperature. A. Mishonov Technical Ed.; NOAA Atlas NESDIS 81, 52pp.
 

diff --git a/vignettes/e_GLMWorkflow.Rmd b/vignettes/e_GLMWorkflow.Rmd
@@ -361,7 +361,7 @@ Harvard University M, Morris P J (2022). Museum of Comparative Zoology, Harvard
 
 Hendrickson D A, Cohen A E, Casarez M J (2022). University of Texas, Biodiversity Center, Ichthyology Collection (TNHCi). Version 5.175. University of Texas at Austin, Biodiversity Collections. DOI: 10.15468/h8gxdr. Accessed via GBIF on 2020-10-13.
 
-INVEMAR. SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://www.invemar.org.co/siam/sibm/index.htm Accessed via OBIS on 2020-11-04. 
+INVEMAR. SIBM en línea: Sistema de Información sobre Biodiversidad Marina. Santa Marta: Instituto de investigaciones Marinas y Costeras José Benito Vives de Andréis,. https://siam.invemar.org.co/ Accessed via OBIS on 2020-11-04. 
 
 Locarnini RA, Mishonov AV, Baranova OK, Boyer TP, Zweng MM, Garcia HE, Reagan JR, Seidov D, Weathers K, Paver CR, Smolyar I (2018). World Ocean Atlas 2018, Volume 1: Temperature. A. Mishonov Technical Ed.; NOAA Atlas NESDIS 81, 52pp.