Replace haddock3-analysis-components with haddock3-ui package

MANIFEST.in

@@ -36,3 +36,4 @@ recursive-include varia *.lua
 recursive-include varia *.md
 
 include src/haddock/bin/*
+include src/haddock/libs/assets/*

setup.py

@@ -172,7 +172,7 @@ def read_description(*names, **kwargs) -> str:
     url="https://github.com/haddocking/haddock3",
     packages=find_packages("src"),
     package_dir={"": "src"},
-    package_data={"haddock": ["bin/*"]},
+    package_data={"haddock": ["bin/*"], "haddock.libs.assets": ["*.css", "*.js"]},
     include_package_data=True,
     zip_safe=False,
     classifiers=[

src/haddock/clis/cli_analyse.py

@@ -490,7 +490,7 @@ def analyse_step(
             offline=offline,
             )
         tables = clt_table_handler(clt_file, ss_file, is_cleaned)
-        report_generator(boxes, scatters, tables, step)
+        report_generator(boxes, scatters, tables, step, offline)
         # provide a zipped archive of the top ranked structures
         zip_top_ranked(ss_file, cluster_ranking, Path("summary.tgz"))
 

src/haddock/libs/assets/__init__.py

@@ -0,0 +1,12 @@
+"""Static assets
+
+Static assets for analysis report.
+
+Files where downloaded from
+https://cdn.jsdelivr.net/npm/@i-vresse/haddock3-ui@~0.3.0/dist/index.css
+and
+https://cdn.jsdelivr.net/npm/@i-vresse/haddock3-ui@~0.3.0/dist/report.bundle.js
+"""
+import importlib.resources as importlib_resources
+
+haddock_ui_path = importlib_resources.files("haddock.libs.assets")