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TAD_pathways#19

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Colin-Cheng wants to merge 46 commits intogreenelab:mastergreenelab/tad_pathways_pipeline:masterfrom marislab:mastermarislab/tad_pathways_pipeline:masterCopy head branch name to clipboard

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Commits on Jul 5, 2018

• Add files via upload

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• Delete generate_index_files.py

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• Add files via upload

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Commits on Jul 6, 2018

• Add files via upload

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• add the TAD_boundary argument

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• Update build_custom_tad_genelist.py

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Commits on Jul 11, 2018

• Update build_custom_tad_genelist.py

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Commits on Jul 12, 2018

• update data directory

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• add tables directory

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• Delete example_pipeline_bmd.sh

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• Delete example_pipeline_t2d.sh

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• Delete bmd_gene_evidence.csv

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• Delete bmd_gene_evidence_summary.tsv

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• Delete t2d_gene_evidence.csv

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• Delete t2d_gene_evidence_summary.tsv

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• Delete venn_bmd.tiff

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• Delete venn_t2d.tiff

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• Delete bmd_LD_complete_gestalt.tsv

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• Delete bmd_LD_gestalt.tsv

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• Delete bmd_LD_pvalues.tsv

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• Delete bmd_complete_gestalt.tsv

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• Delete bmd_gestalt.tsv

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• Delete bmd_nearest_gene_complete_gestalt.tsv

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• Delete bmd_nearest_gene_gestalt.tsv

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• Delete bmd_nearest_gene_pvalues.tsv

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• Delete bmd_pvalues.tsv

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• Delete t2d_complete_gestalt.tsv

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• Delete t2d_gestalt.tsv

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• Delete t2d_pvalues.tsv

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Commits on Jul 13, 2018

• add index directory

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• Add output files from visualize

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• add output form generate_index_files.py

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• Add files via upload

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• Add output file from visualize

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• add generate_index_file and visualize

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• Update build_custom_tad_genelist.py

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Commits on Jul 17, 2018

• add run_pipeline.sh

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• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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Commits on Jul 18, 2018

• Update README.md

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Commits on Dec 18, 2018

• Update build_custom_tad_genelist.py

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