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Tkaitchuck #79

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Merge my branch's changes with mainline:

  1. Make sure we aren't hit with the classic matrix size=1 bug in decode.R
  2. Make Params mandatory in ReadCountsFile so that we don't get hit with the same bug we saw earlier with inconsistent params.
  3. Call validate input in Decode_dist so that we error out if the input is invalid.
  4. Add parameter_viz.py to visualize tradeoffs between H,F,P,Q settings.

Tom Kaitchuck added 30 commits January 8, 2016 15:27
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