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Fix last window excluded in fiducials #37

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Fix last window excluded in fiducials #37

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7 changes: 3 additions & 4 deletions pyPPG/fiducials.py
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Original file line number Diff line number Diff line change
Expand Up @@ -143,7 +143,7 @@ def get_peak_onset(self, peak_detector='PPGdet'):
w = fs * win_sec #window length(number of samples)
win_starts = np.array(list(range(0,len(x),round(0.8*w))))
win_starts = win_starts[0:min(np.where([win_starts >= len(x) - w])[1])]
win_starts = np.insert(win_starts,len(win_starts), len(x) + 1 - w)
win_starts = np.insert(win_starts,len(win_starts), len(x) - w)

# before pre-processing
hr_win=0 #the estimated systolic peak-to-peak distance, initially it is 0
Expand All @@ -156,12 +156,11 @@ def get_peak_onset(self, peak_detector='PPGdet'):

# detect peaks in windows
all_p4 = []
all_hr = np.empty(len(win_starts)-1)
all_hr [:] = np.NaN
all_hr = np.full_like(win_starts, np.nan)
hr_past = 0 # the actual heart rate
hrvi = 0 # heart rate variability index

for win_no in range(0,len(win_starts) - 1):
for win_no in range(0,len(win_starts)):
curr_els = range(win_starts[win_no],win_starts[win_no] + w)
curr_x = x[curr_els]

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