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fix: fixed download pdf link for data_portal #1

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fix: fixed download pdf link for data_portal #1

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8808fd8
fix: fixed download pdf link for data_portal
OkoloJohnbosco Jan 24, 2023
0f51bf4
chore: updated the pdf links for top navigation
OkoloJohnbosco Jan 30, 2023
f5e6978
chore: fixed image route for mrna and dna bio pages
OkoloJohnbosco Jan 30, 2023
29d53c4
chore: updated the top nav link on all html files
OkoloJohnbosco Jan 30, 2023
bd17c2a
chore: revert docs.yaml to normal
OkoloJohnbosco Jan 30, 2023
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2 changes: 1 addition & 1 deletion DOCUMENTATION.md
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Expand Up @@ -70,7 +70,7 @@ The convention for this, when updating docs.yml is the following:

- <font-awesome-icon> <content> <url ending in .pdf>: 'index.md'
example:
- fa-file-pdf-o Download PDF /API/PDF/API_UG.pdf: 'index.md'
- fa-file-pdf-o Download PDF /output/dist/API/PDF/fafiletext_Download_PDF_/API/PDF/API_UG.pdf: 'index.md'

### Documentation Conventions

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6 changes: 2 additions & 4 deletions css/styles.css
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Expand Up @@ -117,6 +117,7 @@ h5 {
}
h1.hero-heading {
font-size: 40px;
color: #fff;
}
.hero-search-container {
display: flex;
Expand Down Expand Up @@ -223,7 +224,7 @@ h1.hero-heading {
}

.my-container {
width: 80%;
width: 92%;
display: block;
}

Expand Down Expand Up @@ -453,9 +454,6 @@ footer a:visited {
background-color: rgb(206, 202, 202);
}

.navbar-nav li a:hover {
color: white;
}

#navbarDropdownMenuLink:hover {
color: white;
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2 changes: 1 addition & 1 deletion docs/API/PDF/index.md
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@@ -1 +1 @@
A PDF version of this document is available [here](/API/PDF/API_UG.pdf).
A PDF version of this document is available [here](/output/dist/API/PDF/fafiletext_Download_PDF_/API/PDF/API_UG.pdf).
2 changes: 1 addition & 1 deletion docs/Data/PDF/index.md
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@@ -1 +1 @@
A PDF version of this document is available [here](/Data/PDF/Data_UG.pdf).
A PDF version of this document is available [here](/output/dist/Data_Submission/PDF/fafiletext_Download_PDF_/Data_Submission_Portal/PDF/Data_Submission_Portal_UG.pdf).
2 changes: 1 addition & 1 deletion docs/Data_Portal/PDF/index.md
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@@ -1 +1 @@
A PDF version of this document is available [here](/Data_Portal/PDF/Data_Portal_UG.pdf).
A PDF version of this document is available [here](/output/dist/Data_Portal/PDF/fafiletext_Download_PDF_/Data_Portal/PDF/Data_Portal_UG.pdf).
2 changes: 1 addition & 1 deletion docs/Data_Submission_Portal/PDF/index.md
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@@ -1,4 +1,4 @@



A PDF version of this document is available [here](/Data_Submission_Portal/PDF/Data_Submission_Portal_UG.pdf).
A PDF version of this document is available [here](/output/dist/Data_Submission/PDF/fafiletext_Download_PDF_/Data_Submission_Portal/PDF/Data_Submission_Portal_UG.pdf).
2 changes: 1 addition & 1 deletion ...ut/dist/Data/Bioinformatics_Pipelines/Bioinformatics_Pipeline:_DNASeq_Analysis/index.html
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Expand Up @@ -652,7 +652,7 @@ <h4>Reference Genome</h4>
</tr>
</tbody>
</table>
<p><img alt="DNA-Seq Alignment Pipeline" src="images/dna-alignment-pipeline_1.png"/></p>
<p><img alt="DNA-Seq Alignment Pipeline" src="../images/dna-alignment-pipeline_1.png"/></p>
<h3>DNA-Seq Alignment Command Line Parameters</h3>
<p><strong>Note that version numbers may vary in files downloaded from the GDC Portal due to ongoing pipeline development and improvement.</strong></p>
<h4>Step 1: Converting BAMs to FASTQs with Biobambam - biobambam2</h4>
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