Support Makefile generation with src/configure.py

.gitignore

@@ -5,13 +5,21 @@
 *.bin
 *~
 
+# Executables and binaries
 bin/**
-src/generate_make.sh
 gamer
 GAMER_CompareData
 GAMER_ExtractUniform
 GAMER_ExtractProfile
-.vscode
+
+# Build files
+src/generate_make.sh
 src/Makefile
 src/Makefile.log
+tool/analysis/gamer_compare_data/Makefile
+tool/analysis/gamer_extract_profile/Makefile
+tool/analysis/gamer_extract_uniform/Makefile
+
+# Settings
+.vscode
 src/.local_settings

src/configure.py

@@ -44,6 +44,11 @@
                        "Default values are marked by '*'.\n"\
                        "Use -lh to show a detailed help message.\n"
 GAMER_EPILOG         = "2023 Computational Astrophysics Lab, NTU. All rights reserved.\n"
+GAMER_TOOL_PATHS     = [
+                         os.path.join("..", "tool", "analysis", "gamer_compare_data"),
+                         os.path.join("..", "tool", "analysis", "gamer_extract_uniform"),
+                         os.path.join("..", "tool", "analysis", "gamer_extract_profile"),
+                       ]
 
 LOGGER     = logging.getLogger()
 LOG_FORMAT = "%(asctime)s %(levelname)-8s: %(message)s"
@@ -455,6 +460,12 @@ def load_arguments( sys_setting : SystemSetting ):
                          help="Output detailed compilation commands.\n"
                        )
 
+    # generate Makefile for tools
+    parser.add_argument( "--tools", type=str2bool, metavar="BOOLEAN",
+                         default=False,
+                         help="Generate Makefile for the analysis tools.\n"
+                       )
+
     # A. options of diffierent physical models
     parser.add_argument( "--model", type=str, metavar="TYPE", gamer_name="MODEL",
                          default="HYDRO", choices=["HYDRO", "ELBDM", "PAR_ONLY"],
@@ -1168,7 +1179,7 @@ def warning( paths, **kwargs ):
     # 5.5 Set the GPU
     gpu_setup = set_gpu( gpus, flags, args )
 
-    # 6. Create Makefile
+    # 6. Create Makefile for GAMER
     # 6.1 Read
     with open( GAMER_MAKE_BASE, "r" ) as make_base:
         makefile = make_base.read()
@@ -1212,5 +1223,33 @@ def warning( paths, **kwargs ):
 
     LOGGER.info("========================================")
     LOGGER.info("%s is created."%GAMER_MAKE_OUT)
+
+    # 7. Create Makefile for tools
+    if args['tools']:
+        all_key_vals = { **sims, **paths, **compiles, **gpu_setup }
+        for tool_path in GAMER_TOOL_PATHS:
+            tool_make_base = os.path.join( tool_path, GAMER_MAKE_BASE )
+            tool_make_out  = os.path.join( tool_path, GAMER_MAKE_OUT )
+
+            # 7.1 Read
+            with open( tool_make_base, "r" ) as make_base:
+                makefile = make_base.read()
+
+            # 7.2 Replace
+            for key, val in all_key_vals.items():
+                makefile, num = re.subn(r"@@@%s@@@"%key, val, makefile)
+                if num > 0: LOGGER.debug("%-25s : %s"%(key, val))
+
+            for key in re.findall(r"@@@(.+?)@@@", makefile):
+                makefile, num = re.subn(r"@@@%s@@@"%key, "", makefile)
+                if num == 0: raise BaseException("The string @@@%s@@@ is not replaced correctly."%key)
+                LOGGER.warning("@@@%s@@@ is replaced to '' since the value is not given or the related option is disabled."%key)
+
+            # 7.3 Write
+            with open( tool_make_out, "w") as make_out:
+                make_out.write( command + makefile )
+
+            LOGGER.info("%s is created."%tool_make_out)
+
     if args["verbose_make"]: LOGGER.info("%s is in verbose mode."%GAMER_MAKE_OUT)
     LOGGER.info("========================================")

tool/analysis/gamer_compare_data/Makefile → tool/analysis/gamer_compare_data/Makefile_base

@@ -9,35 +9,7 @@ EXECUTABLE := GAMER_CompareData
 
 # simulation options
 #######################################################################################################
-# model: HYDRO/ELBDM
-SIMU_OPTION += -DMODEL=HYDRO
-
-# double precision
-#SIMU_OPTION += -DFLOAT8
-
-# double precision for particle floating-point attributes
-#SIMU_OPTION += -DFLOAT8_PAR
-
-# long integer for particle integer attributes
-SIMU_OPTION += -DINT8_PAR
-
-# debug mode
-#SIMU_OPTION += -DGAMER_DEBUG
-
-# support HDF5 format
-SIMU_OPTION += -DSUPPORT_HDF5
-
-
-
-# siimulation parameters
-#######################################################################################################
-NLEVEL        := 10        # level : 0 ~ NLEVEL-1
-MAX_PATCH     := 2000000   # maximum number of patches in each level
-
-NLEVEL        := $(strip $(NLEVEL))
-MAX_PATCH     := $(strip $(MAX_PATCH))
-
-SIMU_PARA = -DNLEVEL=$(NLEVEL) -DMAX_PATCH=$(MAX_PATCH)
+SIMU_OPTION := @@@SIMU_OPTION@@@
 
 
 
@@ -54,11 +26,10 @@ vpath %.cpp ./ GAMER_Functions
 
 # rules and targets
 #######################################################################################################
-HDF5_PATH := /software/hdf5/default
-#HDF5_PATH := /software/hdf5/1.10.6-intel-2023.1.0
+HDF5_PATH := @@@HDF5_PATH@@@
 
-CC    := icpc
-CFLAG := -O3 -w1 -g -diag-disable=10441
+CC    := @@@CXX@@@
+CFLAG := @@@CXXFLAG@@@
 
 INCLUDE  := -I./Header
 ifeq "$(findstring SUPPORT_HDF5, $(SIMU_OPTION))" "SUPPORT_HDF5"
@@ -75,7 +46,7 @@ OBJ     := $(patsubst %.cpp, $(OBJ_DIR)/%.o, $(SOURCE))
 
 
 $(OBJ_DIR)/%.o : %.cpp
-	$(CC) $(CFLAG) $(SIMU_PARA) $(SIMU_OPTION) $(INCLUDE) -o $@ -c $<
+	$(CC) $(CFLAG) $(SIMU_OPTION) $(INCLUDE) -o $@ -c $<
 
 $(EXECUTABLE): $(OBJ)
 	$(CC) $(CFLAG) -o $@ $^ $(LIB)

tool/analysis/gamer_extract_profile/Makefile → tool/analysis/gamer_extract_profile/Makefile_base

@@ -7,39 +7,9 @@ EXECUTABLE := GAMER_ExtractProfile
 
 
 
-# siimulation options
+# simulation options
 #######################################################################################################
-# model: HYDRO/MHD/ELBDM
-SIMU_OPTION += -DMODEL=HYDRO
-
-# double precision
-#SIMU_OPTION += -DFLOAT8
-
-# double precision for particle floating-point attributes
-#SIMU_OPTION += -DFLOAT8_PAR
-
-# long integer for particle integer attributes
-SIMU_OPTION += -DINT8_PAR
-
-# debug mode
-#SIMU_OPTION += -DGAMER_DEBUG
-
-# support HDF5 format
-SIMU_OPTION += -DSUPPORT_HDF5
-
-
-
-# siimulation parameters
-#######################################################################################################
-NLEVEL        := 10        # level : 0 ~ NLEVEL-1
-NCOMP_PASSIVE := 0         # number of passive scalars
-MAX_PATCH     := 2000000   # the maximum number of patches in each level
-
-NLEVEL        := $(strip $(NLEVEL))
-NCOMP_PASSIVE := $(strip $(NCOMP_PASSIVE))
-MAX_PATCH     := $(strip $(MAX_PATCH))
-
-SIMU_PARA = -DNLEVEL=$(NLEVEL) -DMAX_PATCH=$(MAX_PATCH) -DNCOMP_PASSIVE=$(NCOMP_PASSIVE)
+SIMU_OPTION := @@@SIMU_OPTION@@@
 
 
 
@@ -65,14 +35,10 @@ vpath %.cpp ./ GAMER_Functions GAMER_Functions/Interpolation
 
 # rules and targets
 #######################################################################################################
-HDF5_PATH := /software/hdf5/default
-
-CC    := icpc
-CFLAG := -O3 -w1 -g #-xSSE4.2 -fp-model precise
-#CFLAG := -O3 -w1 -mp1
+HDF5_PATH := @@@HDF5_PATH@@@
 
-#CC    := g++
-#CFLAG := -O3 -Wall
+CC    := @@@CXX@@@
+CFLAG := @@@CXXFLAG@@@
 
 #LIB   := -limf
 
@@ -95,7 +61,7 @@ OBJ     := $(patsubst %.cpp, $(OBJ_DIR)/%.o, $(SOURCE))
 
 
 $(OBJ_DIR)/%.o : %.cpp
-	$(CC) $(CFLAG) $(SIMU_PARA) $(SIMU_OPTION) $(INCLUDE) -o $@ -c $<
+	$(CC) $(CFLAG) $(SIMU_OPTION) $(INCLUDE) -o $@ -c $<
 
 $(EXECUTABLE): $(OBJ)
 	$(CC) $(CFLAG) -o $@ $^ $(LIB)

tool/analysis/gamer_extract_uniform/Makefile → tool/analysis/gamer_extract_uniform/Makefile_base

@@ -7,45 +7,9 @@ EXECUTABLE  = GAMER_ExtractUniform
 
 
 
-# siimulation options
+# simulation options
 #######################################################################################################
-# model: HYDRO/MHD/ELBDM
-SIMU_OPTION += -DMODEL=HYDRO
-
-# double precision
-#SIMU_OPTION += -DFLOAT8
-
-# double precision for particle floating-point attributes
-#SIMU_OPTION += -DFLOAT8_PAR
-
-# long integer for particle integer attributes
-SIMU_OPTION += -DINT8_PAR
-
-# enable OpenMP parallelization
-SIMU_OPTION += -DOPENMP
-
-# debug mode
-#SIMU_OPTION += -DGAMER_DEBUG
-
-# support HDF5 format
-SIMU_OPTION += -DSUPPORT_HDF5
-
-# serial version (no MPI is required)
-#SIMU_OPTION += -DSERIAL
-
-
-
-# siimulation parameters
-#######################################################################################################
-NLEVEL        = 10        # level : 0 ~ NLEVEL-1
-NCOMP_PASSIVE = 0         # number of passive scalars
-MAX_PATCH     = 1000000   # the maximum number of patches in each level
-
-NLEVEL        := $(strip $(NLEVEL))
-NCOMP_PASSIVE := $(strip $(NCOMP_PASSIVE))
-MAX_PATCH     := $(strip $(MAX_PATCH))
-
-SIMU_PARA = -DNLEVEL=$(NLEVEL) -DMAX_PATCH=$(MAX_PATCH) -DNCOMP_PASSIVE=$(NCOMP_PASSIVE)
+SIMU_OPTION := @@@SIMU_OPTION@@@
 
 
 
@@ -75,21 +39,11 @@ vpath %.cpp ./ GAMER_Functions GAMER_Functions/Interpolation
 
 # rules and targets
 #######################################################################################################
-HDF5_PATH := /software/hdf5/default
-MPI_PATH  := /software/openmpi/default
-#MPI_PATH  := /opt/mpi/openmpi/1.6.0-intel
-#MPI_PATH  := /usr/local/mpi/openmpi-1.8.4-intel-15.0
-#HDF5_PATH := /projects/ncsa/grav/softwares/miniconda2
-
-
-ifeq "$(findstring SERIAL, $(SIMU_OPTION))" ""
-CXX   := $(MPI_PATH)/bin/mpicxx
-else
-CXX   := icpc
-endif
+HDF5_PATH := @@@HDF5_PATH@@@
+MPI_PATH  := @@@MPI_PATH@@@
 
-CFLAG := -O3 -w1
-#CFLAG := -O3 -Wall
+CXX   := @@@CXX@@@
+CFLAG := @@@CXXFLAG@@@
 
 ifeq "$(findstring GAMER_DEBUG, $(SIMU_OPTION))" "GAMER_DEBUG"
 CFLAG += -g
@@ -119,7 +73,7 @@ OBJ 	 := $(patsubst %.cpp, $(OBJ_PATH)/%.o, $(SOURCE))
 
 
 $(OBJ_PATH)/%.o : %.cpp
-	$(CXX) $(CFLAG) $(SIMU_PARA) $(SIMU_OPTION) $(INCLUDE) -o $@ -c $<
+	$(CXX) $(CFLAG) $(SIMU_OPTION) $(INCLUDE) -o $@ -c $<
 
 $(EXECUTABLE): $(OBJ)
 	$(CXX) $(CFLAG) -o $@ $^ $(LIB)