[New Tutorial] Annotate, prepare tests and publish on workflow registries Galaxy workflows

faqs/galaxy/workflows_get_invocation_id.md

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+---
+title: Get the workflow invocation
+area: workflows
+box_type: tip
+layout: faq
+contributors: [bebatut]
+---
+
+- Go to the workflow invocations page
+    - Before Galaxy 24.0: Go to **User** > **Workflow Invocations**
+    - In Galaxy 24.0: Go to **Data** > **Workflow Invocations**
+    - Above Galaxy 24.1: Go to **Workflow Invocation** in the activity bar on the left
+
+- Open the most recent item
+- Find the invocation id:
+    - Below 24.0, you can get it here:
+
+        ![The image depicts a user interface from a computational workflow or job management system. At the top left, there is a "View Report" button, which likely allows users to access a detailed report of the job or workflow. The interface features two horizontal progress bars: the first indicates that all 4 steps have been successfully scheduled, and the second shows that all 3 jobs are complete. A "Download BioCompute Object" button is present, presumably for downloading a standardized description of the bioinformatics protocol or workflow. The interface includes collapsible sections labeled "Inputs," "Outputs," and "Steps," which likely contain detailed information about the inputs used, outputs generated, and steps involved in the workflow, respectively. At the top right, an invoice number is displayed: "Invoice: 6e32d21c3708b2b6." This interface is part of a system used for managing and monitoring computational jobs, particularly in bioinformatics or computational biology contexts.]({% link faqs/galaxy/images/workflow-invocation-below-24-0.png %})
+
+    - Above Galaxy 24.1 (activity bar), you can find the workflow invocation id from the URL. For example, `https://usegalaxy.org/workflows/invocations/be5c48c113145dd5` means that the workflow invocation id is `be5c48c113145dd5`.

topics/galaxy-interface/tutorials/workflow-fairification/tutorial.bib

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+@article{bray2023planemo,
+  title={The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond},
+  author={Bray, Simon and Chilton, John and Bernt, Matthias and Soranzo, Nicola and van den Beek, Marius and Batut, B{\'e}r{\'e}nice and Rasche, Helena and {\v{C}}ech, Martin and Cock, Peter JA and Gr{\"u}ning, Bj{\"o}rn and others},
+  journal={Genome Research},
+  volume={33},
+  number={2},
+  pages={261--268},
+  year={2023},
+  publisher={Cold Spring Harbor Lab},
+  doi={10.1101/gr.276963.122},
+}
+
+
+@article{de2023ten,
+  title={Ten quick tips for building FAIR workflows},
+  author={de Visser, Casper and Johansson, Lennart F and Kulkarni, Purva and Mei, Hailiang and Neerincx, Pieter and Joeri van der Velde, K and Horvatovich, P{\'e}ter and van Gool, Alain J and Swertz, Morris A and Hoen, Peter AC ‘t and others},
+  journal={PLoS Computational Biology},
+  volume={19},
+  number={9},
+  pages={e1011369},
+  year={2023},
+  publisher={Public Library of Science San Francisco, CA USA},
+  doi={10.1371/journal.pcbi.1011369},
+}
+
+@article{de2021falco,
+	author = {de Sena Brandine, Guilherme and Smith, Andrew D.},
+	journal = {F1000Research},
+	year = {2021},
+	month = {1},
+	pages = {1874},
+	publisher = {F1000 Research Ltd},
+	title = {Falco: high-speed {FastQC} emulation for quality control of sequencing data},
+	volume = {8},
+  doi={10.12688/f1000research.21142.2},
+}
+
+@article{ewels2016multiqc,
+	author = {Ewels, Philip and Magnusson, M\textbackslash{}aans and Lundin, Sverker and K{\~ A}\textcurrency{}ller, Max},
+	journal = {Bioinformatics},
+	number = {19},
+	year = {2016},
+	month = {6},
+	pages = {3047--3048},
+	publisher = {Oxford University Press (OUP)},
+	title = {MultiQC: summarize analysis results for multiple tools and samples in a single report},
+	volume = {32},
+  doi = {10.1093/bioinformatics/btw354},
+}
+
+@article{goble2020fair,
+  title={FAIR computational workflows},
+  author={Goble, Carole and Cohen-Boulakia, Sarah and Soiland-Reyes, Stian and Garijo, Daniel and Gil, Yolanda and Crusoe, Michael R and Peters, Kristian and Schober, Daniel},
+  journal={Data Intelligence},
+  volume={2},
+  number={1-2},
+  pages={108--121},
+  year={2020},
+  publisher={MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA journals-info~…},
+  doi={10.1162/dint_a_00033},
+}
+
+@article{gustafsson2024workflowhub,
+  title={WorkflowHub: a registry for computational workflows},
+  author={Gustafsson, Ove Johan Ragnar and Wilkinson, Sean R and Bacall, Finn and Pireddu, Luca and Soiland-Reyes, Stian and Leo, Simone and Owen, Stuart and Juty, Nick and Fern{\'a}ndez, Jos{\'e} M and Gr{\"u}ning, Bj{\"o}rn and others},
+  journal={arXiv preprint},
+  year={2024},
+  doi={10.48550/arXiv.2410.06941},
+}
+
+@article{wilkinson2025applying,
+  title={Applying the FAIR principles to Computational Workflows},
+  author={Wilkinson, Sean R and Aloqalaa, Meznah and Belhajjame, Khalid and Crusoe, Michael R and de Paula Kinoshita, Bruno and Gadelha, Luiz and Garijo, Daniel and Gustafsson, Ove Johan Ragnar and Juty, Nick and Kanwal, Sehrish and others},
+  journal={Scientific Data},
+  volume={12},
+  number={1},
+  pages={328},
+  year={2025},
+  publisher={Nature Publishing Group UK London},
+  doi={10.1038/s41597-025-04451-9},
+}
+
+@article{yuen2021dockstore,
+  title={The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols},
+  author={Yuen, Denis and Cabansay, Louise and Duncan, Andrew and Luu, Gary and Hogue, Gregory and Overbeck, Charles and Perez, Natalie and Shands, Walt and Steinberg, David and Reid, Chaz and others},
+  journal={Nucleic Acids Research},
+  volume={49},
+  number={W1},
+  pages={W624--W632},
+  year={2021},
+  publisher={Oxford University Press},
+  doi={10.1093/nar/gkab346},
+}