Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Mmuphin wrapper #6584

Merged
merged 40 commits into from
Feb 25, 2025
+852 −0
Merged

Mmuphin wrapper #6584

Changes from 1 commit
Commits
Show all changes
40 commits
Select commit Hold shift + click to select a range
298cadd
mmuphin wrapper draft with errors
renu-pal Nov 22, 2024
ef26199
Update .shed.yml
renu-pal Nov 22, 2024
801cc88
removing long description from .shed.yml
renu-pal Nov 25, 2024
f0ca96f
Update tools/mmuphin/macros.xml
renu-pal Nov 25, 2024
c19da4d
Update tools/mmuphin/macros.xml
renu-pal Nov 25, 2024
52076ec
Update tools/mmuphin/macros.xml
renu-pal Nov 25, 2024
bab0879
Update tools/mmuphin/macros.xml
renu-pal Nov 25, 2024
7c09803
Update tools/mmuphin/macros.xml
renu-pal Nov 25, 2024
f340c26
Update tools/mmuphin/mmuphin.xml
renu-pal Nov 25, 2024
4ee8d65
reducing CRC_abd file size and adding adjust_batch.R file
renu-pal Nov 25, 2024
e861c0f
adding long description into .shed.yml due to linting issue
renu-pal Nov 25, 2024
f65885e
Update .shed.yml
renu-pal Nov 25, 2024
7fafc59
Update .shed.yml
renu-pal Nov 25, 2024
f79c79f
update
paulzierep Nov 28, 2024
1b335f1
update
paulzierep Nov 28, 2024
d86e487
rm unneeded requs
paulzierep Nov 28, 2024
47d426d
Merge pull request #4 from paulzierep/mmuphin_wrapper
renu-pal Nov 29, 2024
f815e86
changing batch value in test, as first column header is null
renu-pal Dec 3, 2024
f36aa66
removing control_output from test
renu-pal Dec 3, 2024
090b476
reducing file size
renu-pal Dec 3, 2024
c5af559
Update mmuphin.xml
renu-pal Dec 10, 2024
e60c159
fixed tests
paulzierep Dec 13, 2024
9c404da
Merge pull request #5 from paulzierep/mmuphin_wrapper
renu-pal Dec 19, 2024
7c2d2d7
Update tools/mmuphin/mmuphin.xml
renu-pal Jan 12, 2025
c1b167c
getting column names in R directly
renu-pal Jan 13, 2025
550cd60
Apply suggestions from code review
bgruening Jan 13, 2025
8d38c99
removed unnecessary commented code
renu-pal Jan 13, 2025
b6e9c39
Update tools/mmuphin/mmuphin.xml
renu-pal Jan 14, 2025
5109992
improving help section
renu-pal Jan 14, 2025
0c902c3
Update tools/mmuphin/mmuphin.xml
renu-pal Jan 14, 2025
19a33c0
removing additional options
renu-pal Jan 15, 2025
663287a
Update tools/mmuphin/mmuphin.xml
renu-pal Jan 16, 2025
a139a38
adding test with covariate=null and few other updates
renu-pal Jan 16, 2025
ed1d307
mak covariates optional with python
paulzierep Jan 31, 2025
9195bf8
Merge pull request #6 from paulzierep/mmuphin_wrapper
renu-pal Feb 4, 2025
591e5b3
adding test case with multiple covariates
renu-pal Feb 7, 2025
fa3e8a5
Update tools/mmuphin/mmuphin.xml
renu-pal Feb 8, 2025
a968744
Update tools/mmuphin/mmuphin.xml
renu-pal Feb 8, 2025
e74fa15
suggested min max convergence value
renu-pal Feb 8, 2025
243f1fc
adding filter in O/P and min max in conv
renu-pal Feb 10, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Update tools/mmuphin/macros.xml 
Co-authored-by: Saim Momin <64724322+SaimMomin12@users.noreply.github.com>
  • Loading branch information
@renu-pal @SaimMomin12
renu-pal and SaimMomin12 authored Nov 25, 2024
commit c19da4d0bcffd75dcfa562880d071b8aba27b0cb
2 changes: 1 addition & 1 deletion tools/mmuphin/macros.xml
View file
Original file line number Diff line number Diff line change
@@ -15,7 +15,7 @@
<requirements>
<requirement type="package" version="@TOOL_VERSION@">bioconductor-mmuphin</requirement>
<requirement type="package" version="2.0.3">r-magrittr</requirement>
<requirement type="package" version="1.1.4">dplyr</requirement>
<requirement type="package" version="1.1.4">r-dplyr</requirement>
<requirement type="package" version="0.33">DT</requirement>
</requirements>
</xml>
Loading