Quarto Publish #670

	on:
	workflow_dispatch:
	schedule:
	- cron: '0 20 * * *'
	push:
	branches: main

	name: Quarto Publish

	jobs:
	build-deploy:
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	container: rocker/geospatial:latest
	permissions:
	contents: write
	steps:

	- run: git config --system --add safe.directory '*'

	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	set-safe-directory: '*'

	- name: Install packages
	shell: Rscript {0}
	run: source('install.R')

	#- uses: quarto-dev/quarto-actions/setup@v2
	# #with:
	# version: 1.4.146

	- name: Render
	run: \|
	quarto render

	- name: Update data
	run: \|
	git config user.name github-actions
	git config user.email [email protected]
	git add data/saved_parameter_chain.csv
	git add data/site_carbon_data.csv
	git add data/PF_analysis_0.Rdata
	git add data/PF_analysis_1.Rdata
	git commit -a -m "update data" \|\| echo "nothing to commit"
	git push https://${GITHUB_PAT}:${GITHUB_PAT}@github.com/${GITHUB_REPOSITORY}

	- name: Publish
	run: \|
	git config user.name github-actions
	git config user.email [email protected]
	git checkout gh-pages
	cp -r _book/* .
	git add .
	git commit -a -m "update pages" \|\| echo "nothing to commit"
	git push https://${GITHUB_PAT}:${GITHUB_PAT}@github.com/${GITHUB_REPOSITORY}

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