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1. powerbacgwas powerbacgwas Public

   PowerBacGWAS: Power calculations for Bacterial GWAS

   Python 13

2. amr_efm_wgs amr_efm_wgs Public

   ARIBA-based pipeline for genotypic prediction of AMR from whole-genome sequences of Enterococcus faecium

   Python 6

3. mrsa_snp_cut-off mrsa_snp_cut-off Public

   R

4. phylogenetic_clustering phylogenetic_clustering Public

   Script to perform phylogenetic partitioning/clustering

   R

5. scripts scripts Public

   variety of different bioinformatic scripts

   Python

6. staph-adaptive-mutations staph-adaptive-mutations Public

   Python 1