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[fix #15] removing paragraph about gol endpoints
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fmichonneau committed Mar 21, 2016
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15 changes: 4 additions & 11 deletions manuscript.Rnw
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Expand Up @@ -283,13 +283,6 @@ APIs:
\item The \emph{synthetic tree} itself, the `Open Tree'.
\end{enumerate}

Additionally, the project provides access to other data, the Graph of Life, that
stores information about the underlying tree alignment graph \citep{Smith2013}
used to synthesize the various sources of information from which the Open Tree
is assembled. Data from this API are not intended for normal users, and its
use will not be demonstrated in this paper, although \texttt{rotl} has functions to
retrieve data it provides.

\texttt{rotl} gives users access to all endpoints provided by version 2 of the
OTL APIs, and other versions of the API can be selected by the user as they
become available. Phylogenetic trees served by the API can be imported directly into
Expand Down Expand Up @@ -458,12 +451,12 @@ using the function \texttt{get\_study\_meta}.
\label{sec:how-does-rotl-fit}

In recent years, R has become an essential part of the toolbox of many
researchers in evolutionary biology and ecology. R greatly facilitates the
researchers in evolutionary biology and ecology. R greatly facilitates the
analysis of large datasets, and allows researchers to combine methods in novel
ways because many methods for comparative analyses are implemented, and because
it is a relatively easy to use programming language. Additionally, as more data
are made available online and accessible using APIs, several packages have been
developed to interact and download these datasets directly in R, thereby
it is a relatively easy to use programming language. Additionally, as more data
are made available online and accessible using APIs, several packages have been
developed to interact and download these datasets directly in R, thereby
enabling direct and reproducible analyses. Notably, the organization rOpenSci
(\url{https://ropensci.org}) has fostered a community of researchers who develop
tools and methods to facilitate the use of open data as well broaden the
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