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Added RNA_vs_protein resource
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federicomarini committed Oct 22, 2019
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Expand Up @@ -76,6 +76,7 @@ A curated list of software and resources for exploring and visualizing (browsing
- [ProteinPaint](https://proteinpaint.stjude.org/examples/), some general info are here: https://www.stjude.org/research/shared-resources/technology-licensing/technologies/proteinpaint-web-application-for-visualizing-genomic-data-sj-15-0021.html, original publication here: https://www.nature.com/articles/ng.3466. Used e.g. to deploy Mouse Retina Development data, https://proteinpaint.stjude.org/F/mm10/2019.mouse.retina.scRNA.html
- [Reptilian pallium](https://public.brain.mpg.de/shiny/apps/SingleCellTranscriptomics/) More exotic species: https://brain.mpg.de/research/laurent-department/software-techniques.html
- [RNA-Seq Viewer](https://github.com/NCBI-Hackathons/rnaseqview) described in https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605993/, and based on the [ideogram.js](https://github.com/eweitz/ideogram) library
- [RNA_vs_protein](https://tsomics.shinyapps.io/RNA_vs_protein/), to explore the quantitative proteome map of the human body, related to the publication https://www.biorxiv.org/content/10.1101/797373v2
- [scClustViz](https://baderlab.github.io/scClustViz/) - focused on exploring clustering results, paper here: https://f1000research.com/articles/7-1522/v2
- [scfind](https://scfind.sanger.ac.uk) for fast searches of large collections of single cell data - source code available here: https://github.com/hemberg-lab/scfind, described in the publication https://www.biorxiv.org/content/10.1101/788596v1
- [SCPortalen](http://single-cell.clst.riken.jp), a single-cell centric database. Published at https://doi.org/10.1093/nar/gkx949
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