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federicomarini authored Oct 22, 2019
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Expand Up @@ -68,7 +68,7 @@ A curated list of software and resources for exploring and visualizing (browsing
- [Multiple sclerosis gene atlas](http://msatlas.compbio.sdu.dk), companion to https://www.biorxiv.org/content/10.1101/584920v1
- [NCI Patient Derived Model Repository](https://pdmdb.cancer.gov/pls/apex/f?p=101:1:0::NO) expression and whole exome data on >350 patients xenografts and patient tissue samples.
- [Neuroexpresso](http://neuroexpresso.org), for the analysis of brain cell type expression profiles. Source available here, https://github.com/PavlidisLab/neuroexpresso, publication: https://www.eneuro.org/content/4/6/ENEURO.0212-17.2017
- [nichExplorer](http://aifantislab.com/niche), an interactive browser for bone marrow microenvironment, accompanying https://doi.org/10.1038/s41586-019-1104-8, with source code available at https://github.com/igordot/nichexplorer
- [nichExplorer](https://compbio.nyumc.org/niche/), an interactive browser for bone marrow microenvironment, accompanying https://doi.org/10.1038/s41586-019-1104-8, with source code available at https://github.com/igordot/nichexplorer. Also available from http://aifantislab.com/niche
- [PanglaoDB](https://panglaodb.se), a database for the exploration of single cell RNA sequencing experiments from mouse and human. Publication at https://academic.oup.com/database/article/doi/10.1093/database/baz046/5427041, GitHub repo: https://github.com/oscar-franzen/PanglaoDB (not the source code of the resource itself)
- [PAWER](https://biit.cs.ut.ee/pawer/), a software tool for analysing protein microarray data - described in publication: https://www.biorxiv.org/content/10.1101/692905v1
- [PEAC RNA-seq](https://peac.hpc.qmul.ac.uk), for exploring RNA-seq of early rheumatoid arthritis individuals and their clinical data. Linked to the publication https://doi.org/10.1016/j.celrep.2019.07.091
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