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  1. nf-core/spatialvi nf-core/spatialvi Public

    Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

    Nextflow 64 25

  2. NBISweden/workshop-reproducible-research NBISweden/workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    HTML 65 33

  3. seqCAT seqCAT Public

    A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data.

    R 7 1

  4. VarClust VarClust Public

    A Python package for clustering of single nucleotide variants from high-through seqencing data.

    Python 7 3

  5. nf-core-quarto-template nf-core-quarto-template Public

    A Quarto template for the nf-core community

    SCSS 1

  6. slime-peek.nvim slime-peek.nvim Public

    A plugin for working with R / Python data exploration in Neovim

    Lua 6