Set default overab to 2

erikrikarddaniel · Oct 26, 2019 · 9e3fc8c · 9e3fc8c
1 parent f191626
commit 9e3fc8c
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/R/dada2bimeras.R b/src/R/dada2bimeras.R
@@ -29,7 +29,7 @@ option_list = list(
     help='Do not allow one off bimeras. See R doc for isBimeraDenovo.'
   ),
   make_option(
-    c('--overab'), type='integer', default=1,
+    c('--overab'), type='integer', default=2,
     help='Parent overabundance multiplier, default %default. See R doc for isBimeraDenovo.'
   ),
   make_option(

diff --git a/src/R/dada2wf.R b/src/R/dada2wf.R
@@ -84,7 +84,7 @@ option_list = list(
     help='Do not allow one off bimeras. See R doc for isBimeraDenovo.'
   ),
   make_option(
-    c('--overab'), type='integer', default=1,
+    c('--overab'), type='integer', default=2,
     help='Parent overabundance multiplier, default %default. See R doc for isBimeraDenovo.'
   ),
   make_option(