Develop pf_kud_*() approaches.

edwardlavender · Sep 14, 2021 · df2a042 · df2a042
1 parent 8502283
commit df2a042
Show file tree

Hide file tree

Showing 7 changed files with 533 additions and 138 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -57,7 +57,8 @@ export(make_matrix_receivers)
 export(mask_io)
 export(pf)
 export(pf_animate_history)
-export(pf_kud)
+export(pf_kud_1)
+export(pf_kud_2)
 export(pf_loglik)
 export(pf_plot_1d)
 export(pf_plot_2d)

diff --git a/R/flapper-package.R b/R/flapper-package.R
@@ -136,7 +136,7 @@
 #'       \item \link{pf_animate_history} animates simulated particle histories;
 #'       \item \link{pf_simplify} assembles movement paths from particle histories;
 #'       \item \link{pf_plot_map} maps the `probability of use' across an area based on sampled particles or reconstructed paths;
-#'       \item \link{pf_kud} applies a kernel smoother to sampled particles or reconstructed paths;
+#'       \item \link{pf_kud_1} and \link{pf_kud_2} apply kernel smoothers to sampled particles or reconstructed paths;
 #'       \item \link{pf_loglik} calculates the log-likelihood of reconstructed paths, given the movement model;
 #'       \item \link{pf_plot_1d} plots the depth time series from observed and reconstructed paths;
 #'       \item \link{pf_plot_2d} maps the reconstructed paths in two-dimensions;

diff --git a/R/pf_analyse_either.R b/R/pf_analyse_either.R
diff --git a/README.Rmd b/README.Rmd
@@ -212,7 +212,7 @@ Each algorithm (AC, DC and ACDC) can be extended through incorporation of a move
 * `pf_animate_history()` animates simulated particle histories;
 * `pf_simplify()` assembles movement paths from particle histories;
 * `pf_plot_map()` maps the 'probability of use' across an area based on sampled particles or reconstructed paths;
-* `pf_kud()` applies a kernel smoother to sampled particles or reconstructed paths;
+* `pf_kud_1()` and `pf_kud_2()` apply kernel smoothers to sampled particles or reconstructed paths;
 * `pf_loglik()` calculates the log-likelihood of reconstructed paths, given the movement model;
 * `pf_plot_1d()` plots the depth time series from observed and reconstructed paths;
 * `pf_plot_2d()` maps the reconstructed paths in two-dimensions;

diff --git a/README.md b/README.md
@@ -430,8 +430,8 @@ process provided by the `pf*()` family of functions:
   - `pf_simplify()` assembles movement paths from particle histories;
   - `pf_plot_map()` maps the ‘probability of use’ across an area based
     on sampled particles or reconstructed paths;
-  - `pf_kud()` applies a kernel smoother to sampled particles or
-    reconstructed paths;
+  - `pf_kud_1()` and `pf_kud_2()` apply kernel smoothers to sampled
+    particles or reconstructed paths;
   - `pf_loglik()` calculates the log-likelihood of reconstructed paths,
     given the movement model;
   - `pf_plot_1d()` plots the depth time series from observed and

diff --git a/man/flapper.Rd b/man/flapper.Rd
diff --git a/man/pf_kud.Rd b/man/pf_kud.Rd