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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,88 @@ | ||
| FROM rocker/shiny:3.6.3 | ||
|
|
||
| RUN apt-get update --fix-missing -y \ | ||
| && apt-get install -y software-properties-common aptitude | ||
| RUN sudo add-apt-repository ppa:cran/libgit2 | ||
| RUN aptitude install -y -f \ | ||
| default-jre-headless \ | ||
| git-core \ | ||
| libcurl4-openssl-dev \ | ||
| libgit2-dev \ | ||
| libjq-dev \ | ||
| libpoppler-cpp-dev \ | ||
| librdf0-dev \ | ||
| libraptor2-dev \ | ||
| librasqal3-dev \ | ||
| libssh2-1-dev \ | ||
| libssl-dev \ | ||
| libv8-dev \ | ||
| libxml2-dev \ | ||
| make pandoc \ | ||
| pandoc-citeproc \ | ||
| libjpeg-dev \ | ||
| zlib1g-dev \ | ||
| cargo \ | ||
| libmagick++-dev \ | ||
| libharfbuzz-dev \ | ||
| libfribidi-dev \ | ||
| mesa-common-dev \ | ||
| && apt-get clean \ | ||
| && rm -rf /var/lib/apt/lists/* | ||
|
|
||
| RUN dpkg -S /usr/include/GL/gl.h | ||
| RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site | ||
| RUN R -e 'install.packages("remotes")' | ||
| RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")' | ||
| RUN Rscript -e 'remotes::install_version("glue",upgrade="never", version = "1.4.2")' | ||
| RUN Rscript -e 'remotes::install_version("mime",upgrade="never", version = "0.9")' | ||
| RUN Rscript -e 'remotes::install_version("stringr",upgrade="never", version = "1.4.0")' | ||
| RUN Rscript -e 'remotes::install_version("markdown",upgrade="never", version = "1.1")' | ||
| RUN Rscript -e 'remotes::install_version("jsonlite",upgrade="never", version = "1.7.1")' | ||
| RUN Rscript -e 'remotes::install_version("data.table",upgrade="never", version = "1.13.0")' | ||
| RUN Rscript -e 'remotes::install_version("RCurl",upgrade="never", version = "1.98-1.2")' | ||
| RUN Rscript -e 'remotes::install_version("xfun",upgrade="never", version = "0.15")' | ||
| RUN Rscript -e 'remotes::install_version("processx",upgrade="never", version = "3.4.4")' | ||
| RUN Rscript -e 'remotes::install_version("knitr",upgrade="never", version = "1.29")' | ||
| RUN Rscript -e 'remotes::install_version("htmltools",upgrade="never", version = "0.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("fs",upgrade="never", version = "1.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("attempt",upgrade="never", version = "0.3.1")' | ||
| RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("datapack",upgrade="never", version = "1.3.2")' | ||
| RUN Rscript -e 'remotes::install_version("dplyr",upgrade="never", version = "1.0.2")' | ||
| RUN Rscript -e 'remotes::install_version("rmarkdown",upgrade="never", version = "2.3")' | ||
| RUN Rscript -e 'remotes::install_version("testthat",upgrade="never", version = "2.3.2")' | ||
| RUN Rscript -e 'remotes::install_version("config",upgrade="never", version = "0.3")' | ||
| RUN Rscript -e 'remotes::install_version("gdata",upgrade="never", version = "2.18.0")' | ||
| RUN Rscript -e 'remotes::install_version("rorcid",upgrade="never", version = "0.6.4")' | ||
| RUN Rscript -e 'remotes::install_version("readtext",upgrade="never", version = "0.76")' | ||
| RUN Rscript -e 'remotes::install_version("shinycssloaders",upgrade="never", version = "1.0.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyBS",upgrade="never", version = "0.61")' | ||
| RUN Rscript -e 'remotes::install_version("shinyjs",upgrade="never", version = "2.0.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinydashboard",upgrade="never", version = "0.7.1")' | ||
| RUN Rscript -e 'remotes::install_version("shinydashboardPlus",upgrade="never", version = "0.7.5")' | ||
| RUN Rscript -e 'remotes::install_version("shinyFeedback",upgrade="never", version = "0.3.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyFiles",upgrade="never", version = "0.8.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyTree",upgrade="never", version = "0.2.7")' | ||
| RUN Rscript -e 'remotes::install_version("shinyWidgets",upgrade="never", version = "0.5.4")' | ||
| RUN Rscript -e 'remotes::install_version("dataone",upgrade="never", version = "2.1.4")' | ||
| RUN Rscript -e 'remotes::install_version("RefManageR",upgrade="never", version = "1.2.12")' | ||
| RUN Rscript -e 'remotes::install_version("EML",upgrade="never", version = "2.0.3")' | ||
| RUN Rscript -e 'remotes::install_version("DT",upgrade="never", version = "0.15")' | ||
| RUN Rscript -e 'remotes::install_version("golem",upgrade="never", version = "0.2.1")' | ||
| RUN Rscript -e 'remotes::install_version("textutils",upgrade="never", version = "0.2-0")' | ||
| RUN Rscript -e 'remotes::install_version("tippy",upgrade="never", version = "0.0.1")' | ||
| RUN Rscript -e 'remotes::install_github("EDIorg/taxonomyCleanr@fc4d758c075d596013a18c1ae1e2cff4f5f8c2ae")' | ||
| RUN Rscript -e 'remotes::install_github("ThinkR-open/tagsinput@9aa70ec34c6fa60ef317446daef4cfaf3b682d1d")' | ||
| RUN Rscript -e 'remotes::install_github("ropenscilabs/emldown@8d98c8fc708dc1f2ecc8eec3d23a66e4f487e658")' | ||
| RUN Rscript -e 'remotes::install_github("earnaud/cedarr@dece7479cac3689e36283df74fe0514748e67f18")' | ||
| RUN Rscript -e 'remotes::install_github("trestletech/shinyAce@6f8f7c9976b44246e91bb5dbaef1b87d6bbb7b77")' | ||
| RUN Rscript -e 'remotes::install_github("EDIorg/EMLassemblyline@f05ef748feed7242c9eae0a794a98e163524dd48")' | ||
| RUN Rscript -e 'remotes::install_github("LukasK13/SummeRnote@7c404e1578ab3567fdb331716ca831913ccf645a")' | ||
|
|
||
| RUN mkdir /build_zone | ||
| ADD . /build_zone | ||
| WORKDIR /build_zone | ||
| RUN R -e 'remotes::install_local("MetaShARK_0.0.0.9000.tar.gz", upgrade="never")' | ||
| EXPOSE 3838 | ||
|
|
||
| CMD R -e "options('shiny.port'=3838,shiny.host='0.0.0.0');MetaShARK::runMetashark()" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,55 +1,88 @@ | ||
| FROM rocker/r-ver:3.6.3 | ||
| RUN apt-get update && apt-get install -y default-jre-headless git-core libcurl4-openssl-dev libgit2-dev libjq-dev libpoppler-cpp-dev librdf0-dev libssh2-1-dev libssl-dev libv8-dev libxml2-dev make pandoc pandoc-citeproc zlib1g-dev && rm -rf /var/lib/apt/lists/* | ||
| FROM rocker/shiny:3.6.3 | ||
|
|
||
| RUN apt-get update --fix-missing -y \ | ||
| && apt-get install -y software-properties-common aptitude | ||
| RUN sudo add-apt-repository ppa:cran/libgit2 | ||
| RUN aptitude install -y -f \ | ||
| default-jre-headless \ | ||
| git-core \ | ||
| libcurl4-openssl-dev \ | ||
| libgit2-dev \ | ||
| libjq-dev \ | ||
| libpoppler-cpp-dev \ | ||
| librdf0-dev \ | ||
| libraptor2-dev \ | ||
| librasqal3-dev \ | ||
| libssh2-1-dev \ | ||
| libssl-dev \ | ||
| libv8-dev \ | ||
| libxml2-dev \ | ||
| make pandoc \ | ||
| pandoc-citeproc \ | ||
| libjpeg-dev \ | ||
| zlib1g-dev \ | ||
| cargo \ | ||
| libmagick++-dev \ | ||
| libharfbuzz-dev \ | ||
| libfribidi-dev \ | ||
| mesa-common-dev \ | ||
| && apt-get clean \ | ||
| && rm -rf /var/lib/apt/lists/* | ||
|
|
||
| RUN dpkg -S /usr/include/GL/gl.h | ||
| RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site | ||
| RUN R -e 'install.packages("remotes")' | ||
| RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")' | ||
| RUN Rscript -e 'remotes::install_version("glue",upgrade="never", version = "1.4.2")' | ||
| RUN Rscript -e 'remotes::install_version("mime",upgrade="never", version = "0.9")' | ||
| RUN Rscript -e 'remotes::install_version("stringr",upgrade="never", version = "1.4.0")' | ||
| RUN Rscript -e 'remotes::install_version("markdown",upgrade="never", version = "1.1")' | ||
| RUN Rscript -e 'remotes::install_version("processx",upgrade="never", version = "3.4.4")' | ||
| RUN Rscript -e 'remotes::install_version("jsonlite",upgrade="never", version = "1.7.1")' | ||
| RUN Rscript -e 'remotes::install_version("htmltools",upgrade="never", version = "0.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("data.table",upgrade="never", version = "1.13.2")' | ||
| RUN Rscript -e 'remotes::install_version("data.table",upgrade="never", version = "1.13.0")' | ||
| RUN Rscript -e 'remotes::install_version("RCurl",upgrade="never", version = "1.98-1.2")' | ||
| RUN Rscript -e 'remotes::install_version("xfun",upgrade="never", version = "0.15")' | ||
| RUN Rscript -e 'remotes::install_version("processx",upgrade="never", version = "3.4.4")' | ||
| RUN Rscript -e 'remotes::install_version("knitr",upgrade="never", version = "1.29")' | ||
| RUN Rscript -e 'remotes::install_version("htmltools",upgrade="never", version = "0.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("fs",upgrade="never", version = "1.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("knitr",upgrade="never", version = "1.30")' | ||
| RUN Rscript -e 'remotes::install_version("attempt",upgrade="never", version = "0.3.1")' | ||
| RUN Rscript -e 'remotes::install_version("shinydashboard",upgrade="never", version = "0.7.1")' | ||
| RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.5.0")' | ||
| RUN Rscript -e 'remotes::install_version("datapack",upgrade="never", version = "1.3.2")' | ||
| RUN Rscript -e 'remotes::install_version("dplyr",upgrade="never", version = "1.0.2")' | ||
| RUN Rscript -e 'remotes::install_version("rmarkdown",upgrade="never", version = "2.3")' | ||
| RUN Rscript -e 'remotes::install_version("testthat",upgrade="never", version = "2.3.2")' | ||
| RUN Rscript -e 'remotes::install_version("config",upgrade="never", version = "0.3")' | ||
| RUN Rscript -e 'remotes::install_version("dplyr",upgrade="never", version = "1.0.2")' | ||
| RUN Rscript -e 'remotes::install_version("rmarkdown",upgrade="never", version = "2.5")' | ||
| RUN Rscript -e 'remotes::install_version("datapack",upgrade="never", version = "1.3.2")' | ||
| RUN Rscript -e 'remotes::install_version("tippy",upgrade="never", version = "0.0.1")' | ||
| RUN Rscript -e 'remotes::install_version("textutils",upgrade="never", version = "0.2-0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyTree",upgrade="never", version = "0.2.7")' | ||
| RUN Rscript -e 'remotes::install_version("shinyWidgets",upgrade="never", version = "0.5.3")' | ||
| RUN Rscript -e 'remotes::install_version("shinyFeedback",upgrade="never", version = "0.2.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinydashboardPlus",upgrade="never", version = "0.7.5")' | ||
| RUN Rscript -e 'remotes::install_version("shinyjs",upgrade="never", version = "2.0.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyFiles",upgrade="never", version = "0.8.0")' | ||
| RUN Rscript -e 'remotes::install_version("gdata",upgrade="never", version = "2.18.0")' | ||
| RUN Rscript -e 'remotes::install_version("rorcid",upgrade="never", version = "0.6.4")' | ||
| RUN Rscript -e 'remotes::install_version("readtext",upgrade="never", version = "0.76")' | ||
| RUN Rscript -e 'remotes::install_version("shinycssloaders",upgrade="never", version = "1.0.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyBS",upgrade="never", version = "0.61")' | ||
| RUN Rscript -e 'remotes::install_version("rorcid",upgrade="never", version = "0.6.4")' | ||
| RUN Rscript -e 'remotes::install_version("shinyjs",upgrade="never", version = "2.0.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinydashboard",upgrade="never", version = "0.7.1")' | ||
| RUN Rscript -e 'remotes::install_version("shinydashboardPlus",upgrade="never", version = "0.7.5")' | ||
| RUN Rscript -e 'remotes::install_version("shinyFeedback",upgrade="never", version = "0.3.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyFiles",upgrade="never", version = "0.8.0")' | ||
| RUN Rscript -e 'remotes::install_version("shinyTree",upgrade="never", version = "0.2.7")' | ||
| RUN Rscript -e 'remotes::install_version("shinyWidgets",upgrade="never", version = "0.5.4")' | ||
| RUN Rscript -e 'remotes::install_version("dataone",upgrade="never", version = "2.1.4")' | ||
| RUN Rscript -e 'remotes::install_version("RefManageR",upgrade="never", version = "1.2.12")' | ||
| RUN Rscript -e 'remotes::install_version("readtext",upgrade="never", version = "0.76")' | ||
| RUN Rscript -e 'remotes::install_version("golem",upgrade="never", version = "0.2.1")' | ||
| RUN Rscript -e 'remotes::install_version("gdata",upgrade="never", version = "2.18.0")' | ||
| RUN Rscript -e 'remotes::install_version("EML",upgrade="never", version = "2.0.4")' | ||
| RUN Rscript -e 'remotes::install_version("EML",upgrade="never", version = "2.0.3")' | ||
| RUN Rscript -e 'remotes::install_version("DT",upgrade="never", version = "0.15")' | ||
| RUN Rscript -e 'remotes::install_version("dataone",upgrade="never", version = "2.1.4")' | ||
| RUN Rscript -e 'remotes::install_github("EDIorg/taxonomyCleanr@a5c947678a2fa02b74474e121f19e26b8acbd2f3")' | ||
| RUN Rscript -e 'remotes::install_version("golem",upgrade="never", version = "0.2.1")' | ||
| RUN Rscript -e 'remotes::install_version("textutils",upgrade="never", version = "0.2-0")' | ||
| RUN Rscript -e 'remotes::install_version("tippy",upgrade="never", version = "0.0.1")' | ||
| RUN Rscript -e 'remotes::install_github("EDIorg/taxonomyCleanr@fc4d758c075d596013a18c1ae1e2cff4f5f8c2ae")' | ||
| RUN Rscript -e 'remotes::install_github("ThinkR-open/tagsinput@9aa70ec34c6fa60ef317446daef4cfaf3b682d1d")' | ||
| RUN Rscript -e 'remotes::install_github("LukasK13/SummeRnote@7c404e1578ab3567fdb331716ca831913ccf645a")' | ||
| RUN Rscript -e 'remotes::install_github("trestletech/shinyAce@6f8f7c9976b44246e91bb5dbaef1b87d6bbb7b77")' | ||
| RUN Rscript -e 'remotes::install_github("ropenscilabs/emldown@8d98c8fc708dc1f2ecc8eec3d23a66e4f487e658")' | ||
| RUN Rscript -e 'remotes::install_github("EDIorg/EMLassemblyline@fcc4e3b3b0cf93d02b5bb97908c0a2fc052a959b")' | ||
| RUN Rscript -e 'remotes::install_github("earnaud/cedarr@7756d6ebb1a64b34929a0fe993047239cee443bb")' | ||
| RUN Rscript -e 'remotes::install_github("earnaud/cedarr@dece7479cac3689e36283df74fe0514748e67f18")' | ||
| RUN Rscript -e 'remotes::install_github("trestletech/shinyAce@6f8f7c9976b44246e91bb5dbaef1b87d6bbb7b77")' | ||
| RUN Rscript -e 'remotes::install_github("EDIorg/EMLassemblyline@f05ef748feed7242c9eae0a794a98e163524dd48")' | ||
| RUN Rscript -e 'remotes::install_github("LukasK13/SummeRnote@7c404e1578ab3567fdb331716ca831913ccf645a")' | ||
|
|
||
| RUN mkdir /build_zone | ||
| ADD . /build_zone | ||
| WORKDIR /build_zone | ||
| RUN R -e 'remotes::install_local(upgrade="never")' | ||
| EXPOSE 80 | ||
| CMD R -e "options('shiny.port'=80,shiny.host='0.0.0.0');MetaShARK::run_app()" | ||
| RUN R -e 'remotes::install_local("MetaShARK_0.0.0.9000.tar.gz", upgrade="never")' | ||
| EXPOSE 3838 | ||
|
|
||
| CMD R -e "options('shiny.port'=3838,shiny.host='0.0.0.0');MetaShARK::runMetashark()" |