Bump version to 0.5.0

dpryan79 · Jan 30, 2020 · f331162 · f331162
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commit f331162
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,12 +1,16 @@
+Version 0.5.0:
+
+   * Fixed an issue with the `--cytosine_report` option where the reported chromosome name could be wrong IF the input BAM files were very sparse and multiple threads were used. (issue #88)
+   * libBigWig is now an external dependency as it's needed for handling the "binary bismap format"
+   * Added support for blacklisting reads according to a "binary bismap file". See [here](https://github.com/dpryan79/MethylDackel/blob/master/BBM_Specification.md) for details. Code for this was contributed by @valiec and @bwlang at New England Biolabs.
+
 Version 0.4.0:
 
    * Switched to an external htslib. It is currently compatible with htslib versions 1.4 through 1.9 (the latest one at the time of release).
    * Added the `--perRead` option, as used in https://www.biorxiv.org/content/10.1101/481283v1
    * Removed the `--maxDepth` option, it's not longer required.
    * Fixed issue #58, the `--keepDupes` flag now changes `--ignoreFlags`.
    * Fixed issue #59, the confidence intervals should no longer extend outside of [0, 1].
-   * libBigWig is now an external dependency as it's needed for handling the "binary bismap format"
-   * Added support for blacklisting reads according to a "binary bismap file". See [here](https://github.com/dpryan79/MethylDackel/blob/master/BBM_Specification.md) for details. Code for this was contributed by @valiec and @bwlang at New England Biolabs.
 
 Version 0.3.0:
 

diff --git a/Makefile b/Makefile
@@ -11,7 +11,7 @@ CFLAGS ?= -Wall -g -O3 -pthread
 all: MethylDackel
 
 OBJS = common.o bed.o svg.o pileup.o extract.o MBias.o mergeContext.o perRead.o
-VERSION = 0.4.0
+VERSION = 0.5.0
 
 version.h:
 	echo '#define VERSION "$(VERSION)"' > $@