Add a bit about citing the github repo

dpryan79 · Jan 16, 2017 · 6e9e6e8 · 6e9e6e8
1 parent 6edc73e
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Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -137,7 +137,7 @@ Ignored alignments
 
 By default, any alignment marked as being secondary (bit 256), having failed QC (bit 512), being a PCR/optical duplicate (bit 1024), or being supplemental (bit 2048) is ignored. This is a reasonable default and should only be changed by expert users. For those needing to change this behaviour, please see the `-F` or `--ignoreFlags` options to both `MethylDackel mbias` and `MethylDackel extract`.
 
-To do list
-==========
+Citing MethylDackel
+===================
 
- - [ ] Is the output format the most convenient (it's what Bison uses, so converters have already been written)? It makes more sense to output a predefined VCF format, which would allow processing multiple samples at once. This would require a spec., which should have pretty broad input.
+There are no immediate plans for a MethylDackel publication. If you use MethylDackel (or PileOMeth, as it was formerly known) in your research, please simply site the URL for this repository on github.