[WIP] fixing planemo tests #1375
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bgruening
reviewed
Jan 24, 2025
| <output name="outFileName" file="bamCompare_result1.bg" ftype="bedgraph"/> | ||
| <output name="outFileName" ftype="bedgraph"> | ||
| <assert_contents> | ||
| <has_text_matching expression="chrM\t0\t16569\t1"/> |
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why did you choose to drop the file comparison?
Its a pretty good test to see the differences between both versions.
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There is only one line in the output :)
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then please add an assert for the line_counts as well :)
bgruening
reviewed
Jan 24, 2025
galaxy/wrapper/bamCompare.xml
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| <param name="bamFile1" value="testA.bam" ftype="bam"/> | ||
| <param name="bamFile2" value="testB.bam" ftype="bam"/> | ||
| <param name="showAdvancedOpt" value="yes"/> | ||
| <param name="method" value="own"/> |
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should'nt this be in a conditional like above?
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Yes, these need to be fixed. I wrote in the matrix an issue with the tool. I can not test it ATM.
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