Added 1 bamCompare function

pydeeptools/deeptools/test/test_r_bamCompare.py

@@ -0,0 +1,49 @@
+import pytest
+from deeptools.bamCompare2 import r_bamcompare
+import os.path
+import filecmp
+from os import unlink
+
+ROOT = os.path.dirname(os.path.abspath(__file__)) + "/test_data/"
+BAMFILE_A = ROOT + "test1.bam"
+BAMFILE_B = ROOT + "test2.bam"
+
+
+def test_r_bamcompare():
+    bamifile1 = BAMFILE_A
+    bamifile2 = BAMFILE_B
+    ofile = ROOT + "r_bamcompare_output.bedgraph"
+    ofiletype  = "bedgraph"
+    norm  = "None"
+    effective_genome_size = 0
+    scalefactorsmethod = "None"
+    operation = "ratio"
+    pseudocount = 0
+    # filtering options
+    ignoreduplicates = False
+    minmappingquality = 0
+    samflaginclude = 0
+    samflagexclude = 0
+    minfraglen = 0
+    maxfraglen = 0
+    nproc = 1
+    _ignorechr = []
+    binsize = 500
+    regions = []
+    verbose = False
+
+    # Call the Rust function
+    r_bamcompare(
+        bamifile1, bamifile2, ofile, ofiletype, norm, effective_genome_size, scalefactorsmethod, operation, 
+        pseudocount, ignoreduplicates, minmappingquality, samflaginclude, samflagexclude, minfraglen, maxfraglen, nproc, 
+        _ignorechr, binsize, regions, verbose
+    )
+    # Add assertions to verify the expected behavior
+    expected = ['3R\t0\t500\t0.6213592\n',
+            '3R\t500\t1000\t0.8252427\n',
+            '3R\t1000\t1500\t0.2\n',]
+    _foo = open(ofile, 'r')
+    resp = _foo.readlines()
+    _foo.close()
+    assert f"{resp}" == f"{expected}", f"{resp} != {expected}"
+    unlink(ofile)