Upgrade to 2.0

.Rbuildignore

@@ -1,7 +1,11 @@
-^.*\.Rproj$
+^IDEATools\.Rproj$
 ^\.Rproj\.user$
-^README\.Rmd$
 ^LICENSE\.md$
-^_pkgdown\.yml$
+^doc$
+^Meta$
+^README\.Rmd$
 ^docs$
+^_pkgdown\.yml$
+^\.github$
+^codecov\.yml$
 ^pkgdown$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,84 @@
+# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+on:
+  push:
+    branches:
+      - main
+      - master
+  pull_request:
+    branches:
+      - main
+      - master
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: windows-latest, r: 'release'}
+          - {os: macOS-latest, r: 'release'}
+          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v2
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+
+      - name: Install dependencies
+        run: |
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_REMOTE_: false
+        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check

.github/workflows/test-coverage.yaml

@@ -0,0 +1,48 @@
+on:
+  push:
+    branches:
+      - main
+      - master
+  pull_request:
+    branches:
+      - main
+      - master
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        uses: actions/cache@v2
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install dependencies
+        run: |
+          install.packages(c("remotes"))
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("covr")
+        shell: Rscript {0}
+
+      - name: Test coverage
+        run: covr::codecov()
+        shell: Rscript {0}

.gitignore

@@ -1,5 +1,6 @@
 .Rproj.user
 .Rhistory
-.RData
-.Ruserdata
+inst/doc
+doc
+Meta
 docs

DESCRIPTION

@@ -1,39 +1,44 @@
 Package: IDEATools
-Type: Package
-Title: Ressources et outils pour le traitement de données IDEA4 sous R
-Version: 1.1
-Authors@R: c(
-    person("David", "Carayon", email = "[email protected]", role = c("aut", "cre")))
-Maintainer: David Carayon <[email protected]>
-Description: L'objectif du package IDEATools est de proposer des outils et ressources mobilisables sous R afin de manipuler des données issues d'enquêtes réalisées dans le cadre de la méthode IDEA4, notamment les restitutions graphiques en lien avec l'approche par les propriétés de la durabilité. Ce package est également le support d'un applicatif interactif web basé sur la librairie "Shiny", destiné à proposer une interface simple et intuitive à tout utilisateur non inité à R. 
-License: GPL-3
-Depends: R (>= 2.10)
+Title: A Collection of Tools Dedicated to the IDEA4 Method
+Version: 2.0
+Authors@R: 
+    person(given = "David",
+           family = "Carayon",
+           role = c("aut", "cre"),
+           email = "[email protected]",
+           comment = c(ORCID = "0000-0003-0217-2175"))
+Description: IDEATools is an R package that provides tools to automate the processing of data collected as part of IDEA 4 diagnostics. Starting from the original data collecting files (xls, xlsx, json) this packages provides functions to compute IDEA indicators, draw modern and aesthetic plots, and produce a wide range of reporting materials. 
 Encoding: UTF-8
 LazyData: true
+Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.1.1
 Imports: 
     dplyr,
-    ggplot2,
+    magrittr,
     janitor,
-    purrr,
-    readr,
-    readxl,
     jsonlite,
+    readxl,
     stringr,
     stringi,
     tibble,
     tidyr,
-    magrittr,
-    rsvg,
-    glue,
-    ggpubr,
-    rmarkdown,
-    knitr,
-    openxlsx,
-    ggrepel,
+    purrr,
     ggimage,
     pdftools,
+    ggpubr,
+    ggplot2,
+    glue,
     cli,
-    officer,
+    rsvg,
+    rmarkdown,
+    knitr,
+    ggrepel
+License: GPL-3
+Depends: 
+    R (>= 2.10)
+VignetteBuilder: knitr
+Suggests: 
+    covr,
+    pagedown,
     officedown,
-    pagedown
+    openxlsx

IDEATools.Rproj

@@ -1,7 +1,7 @@
 Version: 1.0
 
-RestoreWorkspace: Default
-SaveWorkspace: Default
+RestoreWorkspace: No
+SaveWorkspace: No
 AlwaysSaveHistory: Default
 
 EnableCodeIndexing: Yes
@@ -10,11 +10,13 @@ NumSpacesForTab: 2
 Encoding: UTF-8
 
 RnwWeave: Sweave
-LaTeX: pdfLaTeX
+LaTeX: XeLaTeX
 
 AutoAppendNewline: Yes
 StripTrailingWhitespace: Yes
+LineEndingConversion: Posix
 
 BuildType: Package
 PackageUseDevtools: Yes
 PackageInstallArgs: --no-multiarch --with-keep.source
+PackageRoxygenize: rd,collate,namespace

LICENSE.md

@@ -553,7 +553,7 @@ and each file should have at least the “copyright” line and a pointer to
 where the full notice is found.
 
     <one line to give the program's name and a brief idea of what it does.>
-    Copyright (C) 2020 David CARAYON
+    Copyright (C) 2020 David Carayon
 
     This program is free software: you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
@@ -573,7 +573,7 @@ Also add information on how to contact you by electronic and paper mail.
 If the program does terminal interaction, make it output a short notice like this
 when it starts in an interactive mode:
 
-    IDEATools Copyright (C) 2020 David CARAYON
+    IDEATools Copyright (C) 2020 David Carayon
     This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'.
     This is free software, and you are welcome to redistribute it
     under certain conditions; type 'show c' for details.