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daisybio / drevalpy Public

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Add PharmaFormer model#336

Merged

nictru merged 12 commits intodaisybio:developmentdaisybio/drevalpy:developmentfrom

Orakl-Oncology-Dev:pharmaformerOrakl-Oncology-Dev/drevalpy:pharmaformerCopy head branch name to clipboard

Jan 14, 2026

Conversation Commits12 (12)Checks Files changed

Merged

Add PharmaFormer model#336
nictru merged 12 commits intodaisybio:developmentfrom
Orakl-Oncology-Dev:pharmaformer

Commits

Commits on Jan 12, 2026

Implement first PharmaFormer draft
nictru
committed
Remove gene list from pharmaFormer loader
nictru
committed
Add citation
nictru
committed
Fix BPE tests
nictru
committed
Use consistent gene set
nictru
committed
Fix mypy
nictru
committed
Make sure BPE embeddings are created before tests
nictru
committed
Next attempt of adding BP encoding before tests
nictru
committed

Commits on Jan 14, 2026

Add docs
nictru
committed
Add warning for featurizer
nictru
committed
Update pharmaformer drug featurizer references
nictru
committed
Merge branch 'development' into pharmaformer
nictru
authored

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