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Loaders and constant drug_name and cell_line_name#125

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JudithBernett merged 28 commits intodevelopmentfrom
loaders
Feb 21, 2025
Merged

Loaders and constant drug_name and cell_line_name#125
JudithBernett merged 28 commits intodevelopmentfrom
loaders

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@PascalIversen
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@PascalIversen PascalIversen commented Feb 13, 2025

Overall, we will identify cell lines by "cell_line_name" and drugs by "pubchem_id". This is how we will structure the datasets now.
Additional changes:

  • renamed all fingerprint files to "pubchem_id_to_demorgan_{bits}_map.csv"
  • also have the same structure now for Toy_Data as everywhere else, but there, we just have the pubchem_id_to_demorgan_128_map.csv file

@JudithBernett JudithBernett merged commit 334a5c2 into development Feb 21, 2025
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@JudithBernett JudithBernett deleted the loaders branch February 21, 2025 12:47
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