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Contamination removal, fastq preprocessing - #20

Merged
danilotat merged 15 commits into
mainfrom
dev/contaminants-removal
Jun 16, 2026
Merged

Contamination removal, fastq preprocessing#20
danilotat merged 15 commits into
mainfrom
dev/contaminants-removal

fix: restore passing CI dry-run (decompress refs, include trimming ru…

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