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Replace print() statements with logger.info() in pipeline tasks (fixe… #468

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Replace print() statements with logger.info() in pipeline tasks (fixe… #468

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Replace print() statements with logger.info() in pipeline tasks (fixe…
Feb 5, 2026
05069f8
Remove old file format compatibility check for DC4 (fixes #428)
Feb 5, 2026
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4 changes: 1 addition & 3 deletions cosipy/data_io/UnBinnedData.py
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Original file line number Diff line number Diff line change
Expand Up @@ -576,15 +576,13 @@ def write_unbinned_output(self, output_name):
Name of output file. Only include prefix (not file type).
"""


# Units for new DC4 structure of the data
units = (u.keV, u.s, u.rad, u.rad,
u.rad, u.rad, u.rad, u.rad,
u.cm, u.deg, u.deg,
u.dimensionless_unscaled)

# Old UnBinned data structure did not have the last field
# (CO_seq); this special case should be removed for DC4.
units = units[:len(self.cosi_dataset.keys())]

if self.unbinned_output == 'fits':
# For fits output
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14 changes: 7 additions & 7 deletions cosipy/pipeline/task/task.py
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Original file line number Diff line number Diff line change
Expand Up @@ -117,7 +117,7 @@ def cosi_bindata(argv=None):
#Apply optional time selection:
if config.get("tmin") is not None and config.get("tmax") is not None:
#
print("Applying time selection %f-%f to the unbinned data" % (tmin,tmax))
logger.info("Applying time selection %f-%f to the unbinned data" % (tmin,tmax))
#
tseldata_name="tsel_unbinned_data" if not args.suffix else str("tsel_unbinned_data_"+args.suffix)
tseldata_path=odir/tseldata_name
Expand All @@ -140,8 +140,8 @@ def cosi_bindata(argv=None):
raise RuntimeError(f"{bdata_path} already exists. If you mean to replace it then use --overwrite.")
get_binned_data(yaml_path,data_path,bdata_path, psichi_coo)
#
print(str(" Binning configuration file " + str(yaml_path) + " is ready"))
print(str(" Binned data file "+str(bdata_path)+" is ready for analysis"))
logger.info(str(" Binning configuration file " + str(yaml_path) + " is ready"))
logger.info(str(" Binned data file "+str(bdata_path)+" is ready for analysis"))


if __name__ == "__main__":
Expand Down Expand Up @@ -258,14 +258,14 @@ def cosi_threemlfit(argv=None):
results.display()
results.write_to(odir/result_name, overwrite=args.overwrite)

print("Median and errors:")
logger.info("Median and errors:")
fitted_par_err = get_fit_par(results)
for par_name,(par_median,par_err) in fitted_par_err.items():
print(f"{par_name} = {par_median:.2e} +/- {par_err:.2e}")
logger.info(f"{par_name} = {par_median:.2e} +/- {par_err:.2e}")

print("Total flux:")
logger.info("Total flux:")
fl, el_fl, eh_fl = get_fit_fluxes(results)
print("flux=%f +%f -%f" % (fl, el_fl, eh_fl))
logger.info("flux=%f +%f -%f" % (fl, el_fl, eh_fl))

plot_filename = odir/plot_name
if plot_filename.exists() and not args.overwrite:
Expand Down