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@complextissue

Complex Tissue lab

Research group led by Prof. Victor Puelles, PhD, at Aarhus University.
README.md

Welcome to our GitHub page. We are a research group at Aarhus University, part of the Department of Clinical Medicine and the Department of Pathology.

Our research focus is the study of complex tissues using advanced imaging techniques and machine learning and AI techniques.

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  1. pytximport pytximport Public

    Feature-rich Python implementation of the tximport package for gene count estimation.

    Python 45 2

Repositories

Showing 10 of 11 repositories
  • spatiomic Public

    A Python package for unsupervised analysis of spatial (prote)omics data.

    complextissue/spatiomic's past year of commit activity
    Python 19 Apache-2.0 1 0 1 Updated Oct 26, 2026
  • pytximport Public

    Feature-rich Python implementation of the tximport package for gene count estimation.

    complextissue/pytximport's past year of commit activity
    Python 45 GPL-3.0 2 0 11 Updated Jul 10, 2026
  • phosphograph Public
    complextissue/phosphograph's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated May 20, 2026
  • pyclustree Public

    A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.

    complextissue/pyclustree's past year of commit activity
    Python 20 GPL-3.0 0 0 1 Updated Mar 11, 2026
  • snakemake-bulk-rna-seq-workflow Public

    Snakemake workflow for bulk RNA sequencing with pytximport.

    complextissue/snakemake-bulk-rna-seq-workflow's past year of commit activity
    Python 9 GPL-3.0 3 0 0 Updated Oct 24, 2025
  • PyDESeq2 Public Forked from scverse/PyDESeq2

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    complextissue/PyDESeq2's past year of commit activity
    Python 0 MIT 94 0 0 Updated Sep 26, 2025
  • pasta Public Forked from robinsonlabuzh/pasta

    Pattern Analysis of SpaTial omics datA

    complextissue/pasta's past year of commit activity
    TeX 0 4 0 0 Updated Mar 13, 2025
  • k-DBCV Public Forked from Kaufman-Lab-Columbia/k-DBCV

    High speed implementation of Density Based Cluster Validation (DBCV)

    complextissue/k-DBCV's past year of commit activity
    Python 0 MIT 3 0 0 Updated Jan 23, 2025
  • multiSPAETI Public Forked from HiDiHlabs/multiSPAETI

    Implementation of MULTISPATI-PCA in Python

    complextissue/multiSPAETI's past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 1, 2024
  • xpysom Public Forked from Manciukic/xpysom

    XPySom is a minimalistic implementation of batch Self Organizing Map algorithm

    complextissue/xpysom's past year of commit activity
    Python 0 GPL-3.0 448 0 0 Updated Sep 20, 2023
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