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Corey's first pull request (no thanks to alex) #5

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Corey's first pull request (no thanks to alex) #5

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891055d
message to myself
Apr 11, 2015
993d645
uncommented cv test and fixed the cv code
Apr 11, 2015
9de5bad
removed modification to README
cmziemba Apr 11, 2015
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2 changes: 1 addition & 1 deletion gitgoing/gitgoing.py
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Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ def cv(x):
cv : float
The coefficient of variation of the entire array
"""
return mean_plus_one(x)/std_plus_one(x)
return std_plus_one(x)/mean_plus_one(x)

def is_neuron_component(component):
return component in NEURON_COMPONENTS
16 changes: 8 additions & 8 deletions tests/test_gitgoing.py
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Expand Up @@ -37,14 +37,14 @@ def test_std_plus_one(x_norm):
true_std = np.std(x_norm) + 1
assert test_std == true_std

# def test_cv_broken(x_norm):
# from gitgoing.gitgoing import std_plus_one, mean_plus_one, cv
#
# test_cv = cv(x_norm)
# true_cv = std_plus_one(x_norm)/mean_plus_one(x_norm)
#
# # This test will fail
# assert test_cv == true_cv
def test_cv_broken(x_norm):
from gitgoing.gitgoing import std_plus_one, mean_plus_one, cv

test_cv = cv(x_norm)
true_cv = std_plus_one(x_norm)/mean_plus_one(x_norm)

# This test will fail
assert test_cv == true_cv

@pytest.fixture(params=['soma', 'axon', 'synapse', 'dendrite',
pytest.mark.xfail('fibroblast')])
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