Merge pull request #326 from cmu-delphi/release/v2.4.0

Release v2.4.0

Author: chinandrew

.github/dependabot.yml

@@ -0,0 +1,14 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    target-branch: dev
+    schedule:
+      interval: "weekly"
+  # Maintain dependencies for npm
+  - package-ecosystem: "npm"
+    directory: "/"
+    target-branch: dev
+    schedule:
+      interval: "weekly"

.github/release-drafter.yml

@@ -19,6 +19,7 @@ categories:
     labels:
       - "chore"
       - "documentation"
+      - "dependencies"
 change-template: "- #$NUMBER $TITLE"
 change-title-escapes: '\<*_&`#@'
 template: |

.github/workflows/blog.yaml

@@ -16,7 +16,7 @@ jobs:
           # submodules: true  # Fetch Hugo themes (true OR recursive)
           fetch-depth: 3
       - name: Cache Conda
-        uses: actions/cache@v1
+        uses: actions/cache@v2.1.5
         with:
           path: ~/conda_pkgs_dir
           key: ${{ runner.os }}-conda6-${{ hashFiles('environment.yml') }}
@@ -42,7 +42,7 @@ jobs:
         run: |
           Rscript ./dependencies.R
       - name: Restore Blogdown Cache
-        uses: actions/cache@v2
+        uses: actions/cache@v2.1.5
         with:
           path: |
             ./blogdown
@@ -62,10 +62,10 @@ jobs:
             ./content/blog
             ./static/blog
 
-      - uses: actions/setup-node@v1
+      - uses: actions/setup-node@v2.1.5
         with:
           node-version: "12"
-      - uses: actions/cache@v2
+      - uses: actions/cache@v2.1.5
         with:
           path: ~/.npm
           key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}

.github/workflows/ci.yaml

@@ -14,7 +14,7 @@ jobs:
       - uses: actions/[email protected]
         with:
           node-version: "14"
-      - uses: actions/cache@v2
+      - uses: actions/cache@v2.1.5
         with:
           path: ~/.npm
           key: ${{ runner.os }}-node3-${{ hashFiles('**/package-lock.json') }}

.github/workflows/release_main.yml

@@ -18,7 +18,7 @@ jobs:
     steps:
       - name: Check out code
         uses: actions/checkout@v2
-      - uses: actions/setup-node@v2
+      - uses: actions/setup-node@v2.1.5
         with:
           node-version: "14"
       - name: Extract version
@@ -43,11 +43,11 @@ jobs:
     steps:
       - name: Check out code
         uses: actions/checkout@v2
-      - uses: actions/setup-node@v2
+      - uses: actions/setup-node@v2.1.5
         with:
           node-version: "14"
       - name: Cache Node.js modules
-        uses: actions/cache@v2
+        uses: actions/cache@v2.1.5
         with:
           path: ~/.npm # npm cache files are stored in `~/.npm` on Linux/macOS
           key: ${{ runner.OS }}-node2-${{ hashFiles('**/package-lock.json') }}

.prettierignore

@@ -28,6 +28,7 @@
 *.Rmd
 *.md
 *.jpeg
+*.csv
 *.ico
 *.bib
 *.xcf

config.toml

@@ -25,6 +25,11 @@ relativeURLs = false
     name = "Team"
     url = "/about/team"
     weight = 2
+[[menu.main]]
+    parent = "about"
+    name = "Center of Excellence"
+    url = "/about/center-of-excellence"
+    weight = 3
 [[menu.main]]
     parent = "about"
     name = "Publications"

content/about/_index.md

@@ -32,7 +32,7 @@ Public health authorities (federal, state, local), the healthcare industry, the
 
 ### Delphi's milestones
 
-- Since 2013, we've supported U.S. CDC's Influenza Division in advancing and growing a [scientific community around flu forecasting](https://www.cdc.gov/flu/weekly/flusight/index.html). We've been perennial leaders in forecasting accuracy.
+- Since 2013, we've supported U.S. CDC's Influenza Division in advancing and growing a [scientific community around flu forecasting](https://www.cdc.gov/flu/weekly/flusight/index.html). We've been [perennial leaders in forecasting accuracy](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202014-2018%20Results.pdf).
 
 - Since 2016, we've developed the [Delphi Epidata API]({{< apiref "/" >}}), which provides real-time access to epidemiological surveillance data.
 

content/about/center-of-excellence/index.md

@@ -0,0 +1,56 @@
+---
+title: Delphi National Center of Excellence for Epidemic Forecasting
+layout: coe
+members:
+- name: Carnegie Mellon University
+  group: DELPHI Research Group
+  link: /
+  location: Pittsburgh, Pennsylvania, United States
+  pi:
+   - ryan # people keys
+   - roni
+- name: Carnegie Mellon University
+  group: EPP
+  link: https://www.cmu.edu/epp
+  location: Pittsburgh, Pennsylvania, United States
+  pi:
+    - fischhoff
+- name: University of Pittsburgh
+  group: GSPH
+  link: https://publichealth.pitt.edu/
+  location: Pittsburgh, Pennsylvania, United States
+  pi:
+    - burke
+    - panhuis
+- name: Harvard University
+  group: CCDD
+  link: https://www.hsph.harvard.edu/
+  location: Cambridge, Massachusetts, United States
+  pi:
+    - lipsitch
+
+sisters:
+- name: CDC's Influence Division
+  description: Our funders and collaborators at the [CDC's Influenza Division](https://www.cdc.gov/ncird/flu.html), specially the Influenza Applied Research & Modeling team at the [Epidemiology and Prevention branch](https://www.cdc.gov/hiv/dhap/eb/index.html).
+  link: https://www.cdc.gov/ncird/flu.html
+  img: logos/cdc.png
+- name: University of Massachusetts Amherst
+  description: Our sister organization, the [Influenza Forecasting Center of Excellence at UMass Amherst](https://reichlab.io/).
+  link: https://reichlab.io/
+  img: logos/reichlab.png
+
+supporters:
+- Allegheny County Dept of Health
+- Change Healthcare
+- DTRA
+- Facebook
+- Kaiser Permanente Washington Health Research Institute
+- Massachusetts Dept of Public Health
+- Microsoft Azure
+- Pennsylvania Dept. of Health
+- Quidel Inc.
+- UnitedHealth / Optum
+- UPMC
+---
+
+The Delphi National Center of Excellence for Influenza Forecasting was established in 2019. It is a CDC funded and CDC-designated center working on advancing influenza forecasting, and enabling and improving the usefulness of forecasts of both seasonal and pandemic influenza. During the 2020 pandemic, the center expanded to include real-time tracking ("nowcasting") and forecasting of COVID-19, giving rise to the COVIDcast project.  Our goal is to inform public health responses and policy development at the national, state and local levels. Another goal is to inform and empower the general public, providing trustworthy information and reliable short term forecasts that increase the credibility of and trust in public health authorities.