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Merge pull request #310 from cmu-delphi/release/v2.3.0
Release v2.3.0
2 parents 1acc36e + 9f0540f commit d83accb

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‎.github/workflows/ci.yaml

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@@ -61,23 +61,22 @@ jobs:
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echo "::set-output name=tag::$imageTag"
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echo "::set-output name=repo::ghcr.io/${{ github.repository }}"
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- name: Push Dev Tag
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if: startsWith(github.ref, 'refs/heads/dev')
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run: |
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docker tag repo ${{ steps.tagname.outputs.repo }}:${{ steps.tagname.outputs.tag }}
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docker push ${{ steps.tagname.outputs.repo }}:${{ steps.tagname.outputs.tag }}
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- name: Extract version
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if: startsWith(github.ref, 'refs/heads/main')
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id: extract_version
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run: node -pe "'::set-output name=version::' + require('./package.json').version"
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- name: Push Version Tag Tag
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if: startsWith(github.ref, 'refs/heads/main')
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run: |
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docker tag repo ${{ steps.tagname.outputs.repo }}:v{{ steps.extract_version.outputs.version }}
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docker push ${{ steps.tagname.outputs.repo }}:v{{ steps.extract_version.outputs.version }}
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- name: Trigger Webhook
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run: |
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# trigger a webhook update
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curl -H "Authorization: Bearer ${{ secrets.DELPHI_DEPLOY_WEBHOOK_TOKEN }}" \
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-X POST ${{ secrets.DELPHI_DEPLOY_WEBHOOK_URL }} \
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-H "Content-Type: application/x-www-form-urlencoded" \
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-d "repository=${{ steps.tagname.outputs.repo }}&tag=${{ steps.tagname.outputs.tag }}"
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- name: Push Version Tag Tag
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if: startsWith(github.ref, 'refs/heads/main')
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run: |
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docker tag repo ${{ steps.tagname.outputs.repo }}:v${{ steps.extract_version.outputs.version }}
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docker push ${{ steps.tagname.outputs.repo }}:v${{ steps.extract_version.outputs.version }}

‎config.toml

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name = "Explore an Indicator"
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url = "/covidcast/indicator"
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weight = 3
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[[menu.main]]
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parent = "covidcast"
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name = "Explore Correlations"
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url = "/covidcast/correlation"
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weight = 4
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[[menu.main]]
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parent = "covidcast"
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name = "Classic Map"
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url = "/covidcast/classic"
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weight = 4
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weight = 30
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[[menu.main]]
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parent = "covidcast"
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name = "Forecast Evaluation"
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name = "Export Data"
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url = "/covidcast/export"
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weight = 70
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[[menu.main]]
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parent = "covidcast"
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name = "Data Anomalies"
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url = "/covidcast/data-anomalies"
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weight = 71
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[[menu.main]]
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parent = "covidcast"
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name = "Release Log"
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feedbackDelayMin = 45 # in sec
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feedbackDelayMax = 180 # in sec
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feedbackDuration = 60 # show it for 60sec
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highlightLinks = "/covidcast/,/covidcast/summary,/covidcast/indicator,/covidcast/indicator-status,/forecast-eval/"
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highlightLinks = "/covidcast/correlation,/covidcast/data-anomalies"

‎content/about/publications/images/causal.jpg

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‎content/about/publications/index.md

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---
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title: Research and White Papers
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papers:
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- title: "Causal inference in the time of COVID-19"
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image: causal.jpg
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authors: Bonvini, Kennedy, Ventura, Wasserman
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link: https://arxiv.org/abs/2103.04472
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journal: ArXiv preprint
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year: 2021
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- title: "Pancasting: forecasting epidemics from provisional data"
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image: pancasting.jpg
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authors: Brooks

‎content/blog/2020-08-28-api.Rmd

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```{r q-versioning, warning=FALSE, message=FALSE, cache=TRUE}
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library(covidcast)
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library(dplyr)
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# DISABLED for now since the API is not ready
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query_date <- "2020-08-01"
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# covidcast_signal(
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# data_source = "quidel",
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# signal = "covid_ag_raw_pct_positive",
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# start_day = query_date,
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# end_day = query_date,
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# geo_type = "state",
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# geo_value = "ny",
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# issues = c(query_date, "2020-09-04")) %>%
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# select(time_value, value, sample_size, issue, lag) %>%
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# distinct(value, .keep_all=TRUE) %>%
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# knitr::kable("html", digits = 2,
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# col.names = c("Test date", "Positivity rate (%)", "Sample size",
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# "Issued on", "Lag (days)"))
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covidcast_signal(
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data_source = "quidel",
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signal = "covid_ag_raw_pct_positive",
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start_day = query_date,
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end_day = query_date,
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geo_type = "state",
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geo_value = "ny",
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issues = c(query_date, "2020-09-04")) %>%
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select(time_value, value, sample_size, issue, lag) %>%
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distinct(value, .keep_all=TRUE) %>%
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knitr::kable("html", digits = 2,
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col.names = c("Test date", "Positivity rate (%)", "Sample size",
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"Issued on", "Lag (days)"))
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```
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Many data sources are subject to revisions:

‎content/covidcast/correlation.md

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---
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title: COVIDcast | Indicator Correlation
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linkTitle: Indicator Correlation
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description: COVIDcast tracks and forecasts the spread of COVID-19. By Carnegie Mellon's Delphi Research Group.
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layout: covidcast_app
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app_mode: correlation
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order: 4
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heroImage: /images/landing-page/hero-images/covidcast_v2.jpg
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feedback: true
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---

‎content/covidcast/data-anomalies.md

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---
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title: COVIDcast | Data Anomalies
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linkTitle: Data Anomalies
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description: COVIDcast tracks and forecasts the spread of COVID-19. By Carnegie Mellon's Delphi Research Group.
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layout: covidcast_app
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app_mode: data-anomalies
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order: 7
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heroImage: /images/landing-page/hero-images/covidcast_v2.jpg
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feedback: true
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---

‎content/covidcast/export.md

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layout: covidcast_app
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app_mode: export
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order: 6
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icon: solid/download
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heroImage: /images/landing-page/hero-images/covidcast_v2.jpg
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feedback: true
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---

‎content/covidcast/release-log/headless/v2.2.0.md

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---
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title: v2.2.0
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date: 2021-04-01
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---
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### New Features
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* Indicator Status Overview dashboard: Explore the status of API indicators and their coverages
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More information: https://github.com/cmu-delphi/www-covidcast/releases/tag/v2.2.0

‎content/covidcast/release-log/headless/v2.3.0.md

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---
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title: v2.3.0
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date: 2021-04-15
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---
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### New Features
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* Explore Correlations: Explore correlations between different indicators
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* Annotation Overview: Show all data anomalies recorded in COVIDcast in a central place
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* Expandable Line Charts: Expand the line chart of indicators to show the full historic range
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* HHS and Nation Support: The classic map now supports displaying HHS region and national level data
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More information: https://github.com/cmu-delphi/www-covidcast/releases/tag/v2.3.0

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