Python 3.9.14 plus bulk update of many python package #8077

smuzaffar · 2022-09-10T07:41:15Z

update python3 to version 3.9.14 ( which is a security release)
- Can not update python to 3.10 series which requires OpenSSL 1.1.1. As we still support slc7 releases which contain openssl 1.0.2. Although we can maintain two branches ( one for slc7 and one for el8) but lets stick to python 3.9
update pip3 to latest version 22.2.2
update setuptools to 63.4.3 ( can not update to latest 65.x or 64.x series as numpy does not work with that)
Update many pip based packages
- Some of the packages are not yet using their latest versions due to build issues ( new meson backend build system not working correctly)
- Keep numpy <1.23.0 as keras, TensorFlow and xgboost does not work with numpy >= 1.23.0
- Keras version also need to be at 2.6.0 to match the TensorFlow version series
- Patched dxr to use Markup from markupsafe as Jinja2 3.1.2 version does not provide Markup

smuzaffar · 2022-09-10T07:41:31Z

test parameters:

full_cmssw = true

cmsbuild · 2022-09-10T07:41:36Z

A new Pull Request was created by @smuzaffar (Malik Shahzad Muzaffar) for branch IB/CMSSW_12_6_X/master.

@cmsbuild, @smuzaffar, @aandvalenzuela, @iarspider can you please review it and eventually sign? Thanks.
@perrotta, @dpiparo, @rappoccio you are the release manager for this.
cms-bot commands are listed here

smuzaffar · 2022-09-10T07:41:41Z

please test

cmsbuild · 2022-09-10T22:21:09Z

-1

Failed Tests: UnitTests
Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27456/summary.html
COMMIT: a128e50
CMSSW: CMSSW_12_6_X_2022-09-09-2300/el8_amd64_gcc10
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week1/cms-sw/cmsdist/8077/27456/install.sh to create a dev area with all the needed externals and cmssw changes.

The following merge commits were also included on top of IB + this PR after doing git cms-merge-topic:

You can see more details here:
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27456/git-recent-commits.json
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27456/git-merge-result

Unit Tests

I found errors in the following unit tests:

---> test dxr-build had ERRORS
---> test import-ipywidgets had ERRORS
---> test import-keras had ERRORS
---> test run-ipython had ERRORS
and more ...

Comparison Summary

Summary:

No significant changes to the logs found
Reco comparison results: 12 differences found in the comparisons
DQMHistoTests: Total files compared: 51
DQMHistoTests: Total histograms compared: 3618326
DQMHistoTests: Total failures: 11
DQMHistoTests: Total nulls: 0
DQMHistoTests: Total successes: 3618293
DQMHistoTests: Total skipped: 22
DQMHistoTests: Total Missing objects: 0
DQMHistoSizes: Histogram memory added: 0.0 KiB( 50 files compared)
Checked 212 log files, 49 edm output root files, 51 DQM output files
TriggerResults: no differences found

cmsbuild · 2022-09-12T06:35:35Z

Pull request #8077 was updated.

smuzaffar · 2022-09-12T06:37:03Z

test parameters:

addpkg = PhysicsTools/PythonAnalysis, PhysicsTools/TensorFlow

smuzaffar · 2022-09-12T06:37:14Z

please test

smuzaffar · 2022-09-12T07:08:48Z

please test

cmsbuild · 2022-09-12T07:09:03Z

Pull request #8077 was updated.

cmsbuild · 2022-09-15T10:05:14Z

Pull request #8077 was updated.

smuzaffar · 2022-09-15T10:05:28Z

please test for el8_ppc64le_gcc10

smuzaffar · 2022-09-15T10:05:45Z

please test for el8_aarch64_gcc10

smuzaffar · 2022-09-15T10:06:12Z

please test

cmsbuild · 2022-09-15T14:01:05Z

-1

Failed Tests: UnitTests
Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27561/summary.html
COMMIT: e93a4a7
CMSSW: CMSSW_12_6_X_2022-09-14-2300/el8_aarch64_gcc10
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/8077/27561/install.sh to create a dev area with all the needed externals and cmssw changes.

Unit Tests

I found errors in the following unit tests:

---> test TestFWCoreServicesDriver had ERRORS
---> test testFWCoreUtilities had ERRORS
---> test DRNTest had ERRORS

cmsbuild · 2022-09-15T14:53:02Z

-1

Failed Tests: UnitTests
Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27560/summary.html
COMMIT: e93a4a7
CMSSW: CMSSW_12_6_X_2022-09-14-2300/el8_ppc64le_gcc10
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/8077/27560/install.sh to create a dev area with all the needed externals and cmssw changes.

The following merge commits were also included on top of IB + this PR after doing git cms-merge-topic:

You can see more details here:
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27560/git-recent-commits.json
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27560/git-merge-result

Unit Tests

I found errors in the following unit tests:

---> test testMPI had ERRORS
---> test DRNTest had ERRORS

cmsbuild · 2022-09-15T19:50:40Z

+1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27559/summary.html
COMMIT: e93a4a7
CMSSW: CMSSW_12_6_X_2022-09-14-2300/el8_amd64_gcc10
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/8077/27559/install.sh to create a dev area with all the needed externals and cmssw changes.

The following merge commits were also included on top of IB + this PR after doing git cms-merge-topic:

You can see more details here:
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27559/git-recent-commits.json
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27559/git-merge-result

Comparison Summary

Summary:

No significant changes to the logs found
Reco comparison results: 2 differences found in the comparisons
DQMHistoTests: Total files compared: 51
DQMHistoTests: Total histograms compared: 3618326
DQMHistoTests: Total failures: 8
DQMHistoTests: Total nulls: 0
DQMHistoTests: Total successes: 3618296
DQMHistoTests: Total skipped: 22
DQMHistoTests: Total Missing objects: 0
DQMHistoSizes: Histogram memory added: 0.0 KiB( 50 files compared)
Checked 212 log files, 49 edm output root files, 51 DQM output files
TriggerResults: no differences found

smuzaffar · 2022-09-18T09:55:06Z

please test

cmsbuild · 2022-09-19T05:14:57Z

+1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-00d21c/27632/summary.html
COMMIT: e93a4a7
CMSSW: CMSSW_12_6_X_2022-09-18-0000/el8_amd64_gcc10
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week1/cms-sw/cmsdist/8077/27632/install.sh to create a dev area with all the needed externals and cmssw changes.

Comparison Summary

Summary:

No significant changes to the logs found
Reco comparison results: 0 differences found in the comparisons
DQMHistoTests: Total files compared: 51
DQMHistoTests: Total histograms compared: 3621956
DQMHistoTests: Total failures: 2
DQMHistoTests: Total nulls: 0
DQMHistoTests: Total successes: 3621932
DQMHistoTests: Total skipped: 22
DQMHistoTests: Total Missing objects: 0
DQMHistoSizes: Histogram memory added: 0.0 KiB( 50 files compared)
Checked 212 log files, 49 edm output root files, 51 DQM output files
TriggerResults: no differences found

smuzaffar · 2022-09-19T06:18:26Z

+externals

cmsbuild · 2022-09-19T06:18:46Z

This pull request is fully signed and it will be integrated in one of the next IB/CMSSW_12_6_X/master IBs (tests are also fine). This pull request will now be reviewed by the release team before it's merged. @perrotta, @dpiparo, @rappoccio (and backports should be raised in the release meeting by the corresponding L2)

smuzaffar added 4 commits September 10, 2022 09:24

update python to security release 3.9.14

42d4d29

update settup tools to 65.3.0

69b8e09

update python packages

734fc3e

added new pip package files

a128e50

cmsbuild added externals-pending orp-pending pending-signatures tests-pending labels Sep 10, 2022

cmsbuild added tests-started and removed tests-pending labels Sep 10, 2022

smuzaffar changed the title ~~Bulk update of many python package~~ Python 3.9.14 plus bulk update of many python package Sep 10, 2022

cmsbuild added tests-rejected and removed tests-started labels Sep 10, 2022

smuzaffar added 2 commits September 12, 2022 08:34

update xgboost 1.6.2

e2a1951

revert numpy 1.22.4; update stack-data deps

d396cec

cmsbuild added tests-pending and removed tests-rejected labels Sep 12, 2022

cmsbuild added tests-started and removed tests-pending labels Sep 12, 2022

patch dxr to use Markup from markupsafe

d51eb86

revert keras to 2.6.0 to matchit withTF version

0a5c610

update xgboost-arm-and-ppc patch for xgboost 1.6.2

e93a4a7

cmsbuild added tests-pending and removed tests-approved labels Sep 15, 2022

cmsbuild added tests-started and removed tests-pending labels Sep 15, 2022

cmsbuild added tests-approved and removed tests-started labels Sep 15, 2022

cmsbuild added tests-started and removed tests-approved labels Sep 18, 2022

cmsbuild added tests-approved and removed tests-started labels Sep 19, 2022

smuzaffar merged commit ae67940 into IB/CMSSW_12_6_X/master Sep 19, 2022

cmsbuild added externals-approved fully-signed and removed externals-pending pending-signatures labels Sep 19, 2022

cmsbuild mentioned this pull request Sep 19, 2022

Introduction of New-All-In-One tool for Offline Validation of TrkAlignment cms-sw/cmssw#38304

Merged

iarspider added a commit to iarspider/cms-spack-repo that referenced this pull request Sep 20, 2022

Merge changes from cms-sw/cmsdist#8077

38f5082

smuzaffar deleted the python-pack-update branch September 22, 2022 06:22

Python 3.9.14 plus bulk update of many python package #8077

Python 3.9.14 plus bulk update of many python package #8077

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