First commit, cut-and-paste from previous workshop

.gitignore

@@ -0,0 +1,3 @@
+_site
+.DS_Store
+.vscode

404.html

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+---
+layout: default
+---
+
+<div class="container text-center">
+  <h1>404</h1>
+
+  <p><strong>Page not found :(</strong></p>
+  <p>The requested page could not be found.</p>
+</div>

Gemfile

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+source "https://rubygems.org"
+
+# Hello! This is where you manage which Jekyll version is used to run.
+# When you want to use a different version, change it below, save the
+# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
+#
+#     bundle exec jekyll serve
+#
+# This will help ensure the proper Jekyll version is running.
+# Happy Jekylling!
+#gem "jekyll", "~> 3.7.3"
+
+
+# If you want to use GitHub Pages, remove the "gem "jekyll"" above and
+# uncomment the line below. To upgrade, run `bundle update github-pages`.
+gem "github-pages", group: :jekyll_plugins

Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (6.0.6)
+      concurrent-ruby (~> 1.0, >= 1.0.2)
+      i18n (>= 0.7, < 2)
+      minitest (~> 5.1)
+      tzinfo (~> 1.1)
+      zeitwerk (~> 2.2, >= 2.2.2)
+    addressable (2.8.1)
+      public_suffix (>= 2.0.2, < 6.0)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.11.1)
+    colorator (1.1.0)
+    commonmarker (0.23.6)
+    concurrent-ruby (1.1.10)
+    dnsruby (1.61.9)
+      simpleidn (~> 0.1)
+    em-websocket (0.5.3)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0)
+    ethon (0.15.0)
+      ffi (>= 1.15.0)
+    eventmachine (1.2.7)
+    eventmachine (1.2.7-x64-mingw32)
+    execjs (2.8.1)
+    faraday (2.6.0)
+      faraday-net_http (>= 2.0, < 3.1)
+      ruby2_keywords (>= 0.0.4)
+    faraday-net_http (3.0.1)
+    ffi (1.15.5)
+    ffi (1.15.5-x64-mingw32)
+    forwardable-extended (2.6.0)
+    gemoji (3.0.1)
+    github-pages (227)
+      github-pages-health-check (= 1.17.9)
+      jekyll (= 3.9.2)
+      jekyll-avatar (= 0.7.0)
+      jekyll-coffeescript (= 1.1.1)
+      jekyll-commonmark-ghpages (= 0.2.0)
+      jekyll-default-layout (= 0.1.4)
+      jekyll-feed (= 0.15.1)
+      jekyll-gist (= 1.5.0)
+      jekyll-github-metadata (= 2.13.0)
+      jekyll-include-cache (= 0.2.1)
+      jekyll-mentions (= 1.6.0)
+      jekyll-optional-front-matter (= 0.3.2)
+      jekyll-paginate (= 1.1.0)
+      jekyll-readme-index (= 0.3.0)
+      jekyll-redirect-from (= 0.16.0)
+      jekyll-relative-links (= 0.6.1)
+      jekyll-remote-theme (= 0.4.3)
+      jekyll-sass-converter (= 1.5.2)
+      jekyll-seo-tag (= 2.8.0)
+      jekyll-sitemap (= 1.4.0)
+      jekyll-swiss (= 1.0.0)
+      jekyll-theme-architect (= 0.2.0)
+      jekyll-theme-cayman (= 0.2.0)
+      jekyll-theme-dinky (= 0.2.0)
+      jekyll-theme-hacker (= 0.2.0)
+      jekyll-theme-leap-day (= 0.2.0)
+      jekyll-theme-merlot (= 0.2.0)
+      jekyll-theme-midnight (= 0.2.0)
+      jekyll-theme-minimal (= 0.2.0)
+      jekyll-theme-modernist (= 0.2.0)
+      jekyll-theme-primer (= 0.6.0)
+      jekyll-theme-slate (= 0.2.0)
+      jekyll-theme-tactile (= 0.2.0)
+      jekyll-theme-time-machine (= 0.2.0)
+      jekyll-titles-from-headings (= 0.5.3)
+      jemoji (= 0.12.0)
+      kramdown (= 2.3.2)
+      kramdown-parser-gfm (= 1.1.0)
+      liquid (= 4.0.3)
+      mercenary (~> 0.3)
+      minima (= 2.5.1)
+      nokogiri (>= 1.13.6, < 2.0)
+      rouge (= 3.26.0)
+      terminal-table (~> 1.4)
+    github-pages-health-check (1.17.9)
+      addressable (~> 2.3)
+      dnsruby (~> 1.60)
+      octokit (~> 4.0)
+      public_suffix (>= 3.0, < 5.0)
+      typhoeus (~> 1.3)
+    html-pipeline (2.14.3)
+      activesupport (>= 2)
+      nokogiri (>= 1.4)
+    http_parser.rb (0.8.0)
+    i18n (0.9.5)
+      concurrent-ruby (~> 1.0)
+    jekyll (3.9.2)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (~> 0.7)
+      jekyll-sass-converter (~> 1.0)
+      jekyll-watch (~> 2.0)
+      kramdown (>= 1.17, < 3)
+      liquid (~> 4.0)
+      mercenary (~> 0.3.3)
+      pathutil (~> 0.9)
+      rouge (>= 1.7, < 4)
+      safe_yaml (~> 1.0)
+    jekyll-avatar (0.7.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-coffeescript (1.1.1)
+      coffee-script (~> 2.2)
+      coffee-script-source (~> 1.11.1)
+    jekyll-commonmark (1.4.0)
+      commonmarker (~> 0.22)
+    jekyll-commonmark-ghpages (0.2.0)
+      commonmarker (~> 0.23.4)
+      jekyll (~> 3.9.0)
+      jekyll-commonmark (~> 1.4.0)
+      rouge (>= 2.0, < 4.0)
+    jekyll-default-layout (0.1.4)
+      jekyll (~> 3.0)
+    jekyll-feed (0.15.1)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-gist (1.5.0)
+      octokit (~> 4.2)
+    jekyll-github-metadata (2.13.0)
+      jekyll (>= 3.4, < 5.0)
+      octokit (~> 4.0, != 4.4.0)
+    jekyll-include-cache (0.2.1)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-mentions (1.6.0)
+      html-pipeline (~> 2.3)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-optional-front-matter (0.3.2)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-paginate (1.1.0)
+    jekyll-readme-index (0.3.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-redirect-from (0.16.0)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-relative-links (0.6.1)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-remote-theme (0.4.3)
+      addressable (~> 2.0)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0)
+      rubyzip (>= 1.3.0, < 3.0)
+    jekyll-sass-converter (1.5.2)
+      sass (~> 3.4)
+    jekyll-seo-tag (2.8.0)
+      jekyll (>= 3.8, < 5.0)
+    jekyll-sitemap (1.4.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-swiss (1.0.0)
+    jekyll-theme-architect (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-cayman (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-dinky (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-hacker (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-leap-day (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-merlot (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-midnight (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-minimal (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-modernist (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-primer (0.6.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-github-metadata (~> 2.9)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-slate (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-tactile (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-time-machine (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-titles-from-headings (0.5.3)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    jemoji (0.12.0)
+      gemoji (~> 3.0)
+      html-pipeline (~> 2.2)
+      jekyll (>= 3.0, < 5.0)
+    kramdown (2.3.2)
+      rexml
+    kramdown-parser-gfm (1.1.0)
+      kramdown (~> 2.0)
+    liquid (4.0.3)
+    listen (3.7.1)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    mercenary (0.3.6)
+    minima (2.5.1)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-feed (~> 0.9)
+      jekyll-seo-tag (~> 2.1)
+    minitest (5.16.3)
+    nokogiri (1.13.9-x64-mingw32)
+      racc (~> 1.4)
+    nokogiri (1.13.9-x86_64-darwin)
+      racc (~> 1.4)
+    octokit (4.25.1)
+      faraday (>= 1, < 3)
+      sawyer (~> 0.9)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (4.0.7)
+    racc (1.6.0)
+    rb-fsevent (0.11.2)
+    rb-inotify (0.10.1)
+      ffi (~> 1.0)
+    rexml (3.2.5)
+    rouge (3.26.0)
+    ruby2_keywords (0.0.5)
+    rubyzip (2.3.2)
+    safe_yaml (1.0.5)
+    sass (3.7.4)
+      sass-listen (~> 4.0.0)
+    sass-listen (4.0.0)
+      rb-fsevent (~> 0.9, >= 0.9.4)
+      rb-inotify (~> 0.9, >= 0.9.7)
+    sawyer (0.9.2)
+      addressable (>= 2.3.5)
+      faraday (>= 0.17.3, < 3)
+    simpleidn (0.2.1)
+      unf (~> 0.1.4)
+    terminal-table (1.8.0)
+      unicode-display_width (~> 1.1, >= 1.1.1)
+    thread_safe (0.3.6)
+    typhoeus (1.4.0)
+      ethon (>= 0.9.0)
+    tzinfo (1.2.10)
+      thread_safe (~> 0.1)
+    unf (0.1.4)
+      unf_ext
+    unf_ext (0.0.8.2)
+    unf_ext (0.0.8.2-x64-mingw32)
+    unicode-display_width (1.8.0)
+    zeitwerk (2.6.1)
+
+PLATFORMS
+  ruby
+  x64-mingw32
+
+DEPENDENCIES
+  github-pages
+
+BUNDLED WITH
+   2.3.24

README.md

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+# Website for the clarity2022-workshop
+## Building
+
+Build locally with:
+
+```bash
+bundle exec jekyll serve
+```

_config.yml

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+# Welcome to Jekyll!
+#
+# This config file is meant for settings that affect your whole blog, values
+# which you are expected to set up once and rarely edit after that. If you find
+# yourself editing this file very often, consider using Jekyll's data files
+# feature for the data you need to update frequently.
+#
+# For technical reasons, this file is *NOT* reloaded automatically when you use
+# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
+
+# Site settings
+# These are used to personalize your new site. If you look in the HTML files,
+# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
+# You can create any custom variable you would like, and they will be accessible
+# in the templates via {{ site.myvariable }}.
+title: Clarity-CEC2-2022 Workshop
+email: [email protected]
+description: >- # this means to ignore newlines until "baseurl:"
+#  Details of the Clarity 2022 workshop
+#baseurl: "" # the subpath of your site, e.g. /blog
+#url: "" # the base hostname & protocol for your site, e.g. http://example.com
+#twitter_username: jekyllrb
+#github_username:  jekyll
+
+repository: "claritychallenge.github.io/clarity-2022-workshop"
+
+# Build settings
+plugins:
+  - jekyll-feed
+  - jekyll-sitemap
+
+# A list of the pages to display in the navigation bar
+header_pages:
+  - dates.md
+#  - registration.md
+  - programme.md
+  - results.md
+  - organisers.md
+# Exclude from processing.
+# The following items will not be processed, by default. Create a custom list
+# to override the default setting.
+exclude:
+  - Gemfile
+  - Gemfile.lock
+  - node_modules
+  - update_boostrap.sh

_includes/footer.html

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+
+<div class="py-1 border-top footer">
+  <div class="container">
+
+    <div class="row">
+
+      <div class="col-sm">
+          <a href="{{ "/"| relative_url }}">{{ site.title | escape }}</a>
+      </div>
+
+      <div class="col-sm text-right">
+          <a href="mailto:[email protected]">[email protected]</a>
+      </div>
+
+    </div>
+
+  </div>
+</div>

_includes/head.html

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+<head>
+ <meta charset="utf-8">
+  <meta http-equiv="X-UA-Compatible" content="IE=edge">
+  <meta name="viewport" content="width=device-width, initial-scale=1">
+  {%- seo -%}
+  <link rel="stylesheet" href="{{ "/assets/main.css" | relative_url }}">
+  <link rel="stylesheet" href="{{ "/assets/workshopstyle.css" | relative_url }}">
+  <link rel="stylesheet" href="{{ "/assets/js-datatable/css.min/bootstrap-table.min.css" | relative_url }}">
+  <link rel="stylesheet" href="{{ "/assets/js-datatable/css.min/datatable.min.css" | relative_url }}">
+
+
+  {%- feed_meta -%}
+  <script src="{{ "/assets/javascript/bootstrap/jquery.min.js" | relative_url }}"></script>
+  <script src="{{ "/assets/javascript/bootstrap/bootstrap.bundle.min.js" | relative_url }}"></script>
+  <script  src="{{ "/assets/js-datatable/js.min/bootstrap-table.min.js"  | relative_url }}"></script>
+  <script  src="{{ "/assets/js-datatable/js.min/Chart.bundle.min.js"  | relative_url }}"></script>
+  <script  src="{{ "/assets/js-datatable/js.min/datatable.min.js"  | relative_url }}"></script>
+</head>