[refs #119] Outputs MuTect2 stats

This is needed by FilterMutectCalls
chopdgd · Feb 8, 2020 · dce275e · dce275e
1 parent 6a4b776
commit dce275e
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/gatk/MuTect2.wdl b/gatk/MuTect2.wdl
@@ -68,6 +68,7 @@ task MuTect2 {
   output {
     File vcf_file = "~{output_vcf_name}"
     File vcf_idx_file = "~{output_vcf_name}" + ".idx"
+    File mutect2_stats_file = "~{output_vcf_name}" + ".stats"
     File f1r2_counts_tarball = "~{output_f1r2_name}"
   }