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Issues list

Suggested updates to assay_ontology_term_id 5.3 Next minor CELLxGENE schema version after 5.2 editorial schema CELLxGENE Discover dataset schema
#1184 opened Jan 22, 2025 by brianraymor
@brianraymor
Visium Spatial Gene Expression must be prohibited in assay_ontology_term_id 5.3 Next minor CELLxGENE schema version after 5.2 bug Something isn't working schema CELLxGENE Discover dataset schema
#1183 opened Jan 22, 2025 by brianraymor
@brianraymor
re-curate non-human/-mouse data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1182 opened Jan 22, 2025 by jahilton
@jahilton
re-curate unpaired ATAC data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1181 opened Jan 21, 2025 by jahilton
@jahilton
Add breed for small set of "livestock" species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1180 opened Jan 21, 2025 by brianraymor
@brianraymor
Should cell_type_ontology_term_id for model organisms allow descendants of anatomical structure? multispecies discovery Adding new species to CELLxGENE
#1178 opened Jan 21, 2025 by brianraymor
@brianraymor
BUG: scipy 1.15.0 breaking validation bug Something isn't working tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1165 opened Jan 7, 2025 by Bento007
Draft Gallus gallus (chicken) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1159 opened Dec 19, 2024 by brianraymor
@brianraymor
cellxgene-schema CLI must update validation for X and raw.X 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1158 opened Dec 19, 2024 by brianraymor
@ejmolinelli
2
Draft Bos taurus (Cow) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1156 opened Dec 18, 2024 by brianraymor
@brianraymor
[BUG] Bone marrow cell annotation in Tabula Muris Senis 10x bug Something isn't working curation Updates to published datasets
#1151 opened Dec 10, 2024 by bfurtwa
4
add clarity to document and tests to enforce categorical datatypes with string/object values. curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1146 opened Dec 3, 2024 by ejmolinelli
move stateful checks (e.g. is_visium, is_single) higher up in the validator to avoid potential state-related issues curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1125 opened Nov 21, 2024 by ejmolinelli
5 tasks
Draft Sus scrofa domesticus (domestic pig) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE orthologous schema CELLxGENE Discover dataset schema
#1122 opened Nov 20, 2024 by brianraymor
@brianraymor
Draft Pan troglodytes (chimpanzee) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE orthologous schema CELLxGENE Discover dataset schema
#1121 opened Nov 20, 2024 by brianraymor
@brianraymor
Draft Gorilla gorilla (western gorilla) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE orthologous schema CELLxGENE Discover dataset schema
#1120 opened Nov 20, 2024 by brianraymor
@brianraymor
cellxgene-schema CLI must add validation for obs['genetic_ancestry_*'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1114 opened Nov 18, 2024 by brianraymor
@joyceyan
4
bug: anndata 0.11.0 breaking CLI bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1096 opened Nov 14, 2024 by Bento007
Human Brain Cell Atlas - revise cell_type annotation curation Updates to published datasets
#1093 opened Nov 13, 2024 by jahilton
@jahilton
1
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data'] bug Something isn't working curation software dp Data Platform Team work
#1076 opened Oct 30, 2024 by brianraymor
1
Breaking change: one organism per dataset with matching feature reference 6.0 Next major CELLxGENE schema version multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1074 opened Oct 28, 2024 by brianraymor
@brianraymor
5
Discovery for Productionalizing Multi-Species Validator Epic
#1058 opened Oct 22, 2024 by nayib-jose-gloria
Investigate integrating a more flexible, established third-party validation tool P1
#1055 opened Oct 22, 2024 by nayib-jose-gloria
Package experimental validator CLI such that user can easily install + validate against their desired schema
#1054 opened Oct 22, 2024 by nayib-jose-gloria
Dataset MUST NOT contain duplicate obs, by raw counts 5.4 Next minor CELLxGENE schema version after 5.3 schema CELLxGENE Discover dataset schema
#1037 opened Oct 17, 2024 by jahilton
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