Updated test script and config

cellgeni · Jan 21, 2025 · f8aa5a2 · f8aa5a2
1 parent 89c2d05
commit f8aa5a2
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Showing 2 changed files with 17 additions and 3 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -13,9 +13,23 @@ jobs:
       matrix:
         include:
           - series_id: GSE191067
+            subset_list: ""
           - series_id: GSE264508
+            subset_list: ""
           - series_id: GSE274955
-          - series_id: GSE250130 
+            subset_list: ""
+          - series_id: GSE250130
+            subset_list: ""
+          - series_id: E-MTAB-9221
+            subset_list: ""
+          - series_id: GSE111360
+            subset_list: ${{ github.workspace }}/test_data/GSE111360/GSE111360.subset.list
+          - series_id: GSE117988
+            subset_list: ""
+          - series_id: GSE160513
+            subset_list: ""
+          - series_id: PRJNA511433
+            subset_list: ""
 
     steps:
     - name: Checkout repository
@@ -30,4 +44,4 @@ jobs:
       run: |
         chmod +x ./scripts/*
         chmod +x ./tests/test_metadata.sh
-        ./tests/test_metadata.sh ${{ matrix.series_id }}
+        ./tests/test_metadata.sh ${{ matrix.series_id }} $${{ matrix.subset_list }}
diff --git a/tests/test_metadata.sh b/tests/test_metadata.sh
@@ -2,7 +2,7 @@
 set -e
 
 if [ "$#" -lt 1 ]; then
-    echo "Usage: $0 <GSE_ID> <sample_list>"
+    echo "Usage: $0 <SERIES> <sample_list>"
     exit 1
 fi
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,7 +2,7 @@ @@
     set -e
     if [ "$#" -lt 1 ]; then
-        echo "Usage: $0 <GSE_ID> <sample_list>"
+        echo "Usage: $0 <SERIES> <sample_list>"
         exit 1
     fi
@@ Expand Down @@