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Update README.md
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JPatrickPett authored Jan 25, 2025
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Expand Up @@ -37,6 +37,22 @@ module load cellgen/irods
iinit
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### software requirements

A `Dockerfile` is contained in the repository and an already built image can be downloaded from `quay.io`:

```bash
docker pull quay.io/cellgeni/nf-fgwas
```

To run it on an HPC cluster, might need to convert it to Singularity:

```bash
singularity build "nf-fgwas.sif" "docker-daemon://nf-fgwas:latest"
```

To make nextflow use the image, replace its path in the `nextflow.config` file.

## input files

### GWAS studies
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