Code

Activity count feature addition#249

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cbrnr merged 43 commits intocbrnr:maincbrnr/sleepecg:mainfrom simon-p-2000:accelerometer_feature_additionsimon-p-2000/sleepecg:accelerometer_feature_additionCopy head branch name to clipboardFeb 13, 2025

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Commits on Dec 7, 2024

• Added feature to download and process actigraphy data from mesa datasets.

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Commits on Dec 8, 2024

• reformatting sleep readers, adding dummy data for actigraphy and overlap

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Commits on Dec 13, 2024

• added first test case, fixed errors so test case passes

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• Update src/sleepecg/io/sleep_readers.py

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• fixing typo in variable name

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Commits on Dec 15, 2024

• no longer using pandas for test_sleep_readers.py

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Commits on Dec 16, 2024

• reworked sleep_readers.py so pandas is not used, reworked test case to work without panda

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Commits on Dec 19, 2024

• Added more tests, fixed annotation error

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• style fixes

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Commits on Dec 20, 2024

• removed test case that relied on online data

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Commits on Dec 23, 2024

• fixed mypy errors, added caching of processed actigraphy files

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• more mypy error fixes

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• further style fixes

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Commits on Jan 2, 2025

• added feature extraction for actigraphy, reworked tests

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• reworked style

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• style fix in feature extraction

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Commits on Jan 14, 2025

• Fix style

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• Simplify

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• Applying changes proposed in PR review

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Commits on Jan 15, 2025

• minor style fix for imports in test_sleep_readers.py

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Commits on Jan 16, 2025

• reworking mesa sleep reader to skip records not contained in overlap file

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• fixing mypy style error

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• more mypy error fixes

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Commits on Jan 17, 2025

• style fix for sleep reader

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• resetting changes out of scope of this PR

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Commits on Jan 19, 2025

• Merge branch 'cbrnr:main' into activity_counts_model_extension

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Commits on Jan 24, 2025

• Merge branch 'cbrnr:main' into accelerometer_feature_addition

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• initial commit for model extension via activity counts feature

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Commits on Jan 25, 2025

• added documentation for PR

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Commits on Feb 11, 2025

• Merge branch 'cbrnr:main' into activity_counts_model_extension

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Commits on Feb 12, 2025

• Merge branch 'cbrnr:main' into accelerometer_feature_addition

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• Update CHANGELOG.md

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• Update docs/datasets.md

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• adding docstring in test sleep readers, error handling for missing actigraphy files in sleep readers

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• skipping records if line time is not matched

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• attempting to fix mypy error

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Commits on Feb 13, 2025

• Try to fix mypy error

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• Move line

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• reworking loop in read_mesa

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• Merge branch 'activity_counts_model_extension' into accelerometer_feature_addition

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• reverting previous commit

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• style fixes

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• Remove empty line

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