2.0.0-dev0
Pre-release
Pre-release
What's Changed
- cicd: update sc_product_id by @korikuzma in #228
- build!: update civicpy build to 3.x.x by @korikuzma in #233
- refactor: cleanup harvester classes by @korikuzma in #234
- chore: remove requirements files by @korikuzma in #239
- feat!: update transformers to use vrs 2-alpha and gk-pilot schemas by @korikuzma in #245
- refactor!: fix class name casing by @korikuzma in #247
- feat: add support for TherapeuticSubstituteGroup in CIViC by @korikuzma in #249
- feat: add support for CombinationTherapy by @korikuzma in #251
- fix: civic variant aliases should be a list + pydantic warning by @korikuzma in #252
- change: snp ids should not be in civic aliases during transform by @korikuzma in #257
- build: update thera-py + fix TherapyQueryHandler instantiation by @korikuzma in #259
- fix: key error in MoaHarvester _get_feature by @korikuzma in #258
- change: snp ids should not be in civic mp aliases during transform by @korikuzma in #260
- test: update moa source 44 title by @korikuzma in #262
- tests: update civic + moa test data by @korikuzma in #276
- feat: include additional therapy/disease normalizer data in CDM by @korikuzma in #288
- build!: update dependencies and ga4gh digests by @korikuzma in #300
- test: update civicpy cache data by @korikuzma in #302
- chore: remove unused delta class by @korikuzma in #306
- feat!: update database to reflect schema changes by @korikuzma in #266
- cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #307
- fix: creating location parameterized query string by @korikuzma in #310
- feat!: update
/search/studies
endpoint by @korikuzma in #279 - cicd: update elastic beanstalk commands by @korikuzma in #280
- Add lab template CICD actions by @jsstevenson in #297
- build: configure setuptools in pyproject.toml by @jsstevenson in #298
- style: use ruff by @jsstevenson in #313
- cicd: adjust installation checks by @jsstevenson in #316
- test: fix test data dir + update param name change by @korikuzma in #319
- chore: remove unused files by @korikuzma in #321
- fix: add support for civic ash source type by @korikuzma in #323
- chore: remove analysis dir by @korikuzma in #320
- feat: use MOA representative coordinate to create PSC members by @korikuzma in #312
- cicd: add action for closing issue when merged into staging by @korikuzma in #325
- cicd: fix elastic beanstalk deployment by @korikuzma in #326
- fix: replace
StrEnum
withEnum
by @korikuzma in #328 - refactor!: update cli by @korikuzma in #324
Full Changelog: 1.2.0-dev0...2.0.0-dev0