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skip empty annotations - #83

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jvolkening wants to merge 1 commit into
broadinstitute:masterfrom
jvolkening:gtf_empty_annots
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skip empty annotations#83
jvolkening wants to merge 1 commit into
broadinstitute:masterfrom
jvolkening:gtf_empty_annots

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I was using the "collapse_annotations.py" script to prepare a reference for RNASeQC, as suggested in its docs. I got an error running it on an NCBI genome GTF due to empty annotations, e.g. transcript_id "";. The purpose of this PR is to skip empty annotations and allow processing of these files.

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